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PDBsum entry 4joe
Go to PDB code:
Ligand/metal interactions
PDB id
4joe
2 instances of ligand highlighted
ALA-ASN-SER-ARG-
ALA-PRO-THR-SER-
ILE-ILE
Ligands
ALA-ASN-SER-ARG-
ALA-PRO-THR-SER-
ILE-ILE
×2
ALA 1(C) to ILE 10(C)
GOL
×2
GOL 401(A)
GOL 402(A)
Ligand
ALA-ASN-SER-ARG-ALA-PRO-THR-SER-ILE-ILE
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(C)
6
-
-
-
Residue too small to validate
ASN 2(C)
9
9
1
1
Complete
Chiral checks - OK
SER 3(C)
7
7
1
1
Complete
Chiral checks - OK
ARG 4(C)
12
12
1
1
Complete
Chiral checks - OK
ALA 5(C)
6
-
-
-
Residue too small to validate
PRO 6(C)
8
8
1
1
Complete
Chiral checks - OK
THR 7(C)
8
8
1
1
Complete
Chiral checks - OK
SER 8(C)
7
7
1
1
Complete
Chiral checks - OK
ILE 9(C)
9
9
1
1
Complete
Chiral checks - OK
ILE 10(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(C)
-
0
ASN 2(C)
-
0
SER 3(C)
O: OXT
1
ARG 4(C)
O: OXT
1
ALA 5(C)
-
0
PRO 6(C)
-
0
THR 7(C)
-
0
SER 8(C)
-
0
ILE 9(C)
-
0
ILE 10(C)
-
0
Additional Information
Validation carried out using
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-ASN-SER-ARG-ALA-PRO-THR-SER-ILE-ILE
List of
interactions
ALA 1(C) to ILE 10(C)
(also representing equivalent ligand ALA 1(D) to ILE 10(D) )
