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PDBsum entry 4j8g
Go to PDB code:
Ligand/metal interactions
PDB id
4j8g
Ligand highlighted
SER-PHE-ILE-ASP-
ALA-LYS-LYS-MET-
PRO
Ligands
SER-PHE-ILE-ASP-
ALA-LYS-LYS-MET-
PRO
SER 2(D) to PRO 10(D)
Ligand
SER-PHE-ILE-ASP-ALA-LYS-LYS-MET-PRO
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
SER 2(D)
7
7
1
1
Complete
Chiral checks - OK
PHE 3(D)
12
12
1
1
Complete
Chiral checks - OK
ILE 4(D)
9
9
1
1
Complete
Chiral checks - OK
ASP 5(D)
9
9
1
1
Complete
Chiral checks - OK
ALA 6(D)
6
-
-
-
Residue too small to validate
LYS 7(D)
10
10
1
1
Complete
Chiral checks - OK
LYS 8(D)
10
10
1
1
Complete
Chiral checks - OK
MET 9(D)
9
9
1
1
Complete
Chiral checks - OK
PRO 10(D)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
SER 2(D)
O: OXT
1
PHE 3(D)
-
0
ILE 4(D)
-
0
ASP 5(D)
OD2: OD1
|
OD1: OD2
2
ALA 6(D)
-
0
LYS 7(D)
-
0
LYS 8(D)
O: OXT
1
MET 9(D)
-
0
PRO 10(D)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand SER-PHE-ILE-ASP-ALA-LYS-LYS-MET-PRO
List of
interactions
SER 2(D) to PRO 10(D)
