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PDBsum entry 4e52
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Ligand/metal interactions
PDB id
4e52
2 instances of ligand highlighted
GMH-KD5
Ligands
GMH-KD5
×2
GMH 1(D) to KD5 2(D)
GMH 1(E) to KD5 2(E)
Metals
_CA
×9
CA 403(A)
CA 401(A)
CA 402(A)
Ligand
GMH-KD5
GMH
-
L-Glycero-Alpha-D-Manno-Heptopyranose [L-Glycero-Alpha-D-Manno-Heptose; l-Glycero-D-Manno- Heptose; l-Glycero-Manno-Heptose; l-Glycero-D-Manno- Heptopyranose]
Formula:
C
7
H
14
O
7
KD5
-
4,7-Anhydro-3-Deoxy-D-Manno-Oct-2-Ulosonic acid
Formula:
C
8
H
12
O
7
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GMH 1(D)
14
14
0
0
0
0
0
0
0
0
KD5 2(D)
15
9
1
0
6
0
-
-
-
-
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GMH-KD5
List of
interactions
GMH 1(D) to KD5 2(D)
_CA
×9
