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PDBsum entry 4a5t
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Ligand/metal interactions
PDB id
4a5t
Ligand highlighted
NGA-GAL-SIA
Ligands
NGA-GAL-SIA
NGA 1(A) to SIA 3(A)
Metals
_CL
×2
CL 1002(S)
CL 1001(S)
Ligand
NGA-GAL-SIA
NGA
-
2-Acetamido-2-Deoxy-Beta-D-Galactopyranose [N-Acetyl-Beta-D-Galactosamine; 2-Acetamido-2-Deoxy- Beta-D-Galactose; 2-Acetamido-2-Deoxy-D-Galactose; 2- Acetamido-2-Deoxy-Galactose; n-Acetyl-D-Galactosamine]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
19
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NGA 1(A)
15
15
1
0
Complete
Chiral checks - OK
GAL 2(A)
12
12
1
0
Complete
Chiral checks - OK
SIA 3(A)
21
21
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NGA-GAL-SIA
List of
interactions
NGA 1(A) to SIA 3(A)
_CL
×2
