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PDBsum entry 3vxu
Go to PDB code:
Ligand/metal interactions
PDB id
3vxu
2 instances of ligand highlighted
ARG-PHE-PRO-LEU-
THR-PHE-GLY-TRP-
CYS-PHE
Ligands
ARG-PHE-PRO-LEU-
THR-PHE-GLY-TRP-
CYS-PHE
×2
ARG 1(C) to PHE 10(C)
Ligand
ARG-PHE-PRO-LEU-THR-PHE-GLY-TRP-CYS-PHE
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 1(C)
12
12
1
1
Complete
Chiral checks - OK
PHE 2(C)
12
12
1
1
Complete
Chiral checks - OK
PRO 3(C)
8
8
1
1
Complete
Chiral checks - OK
LEU 4(C)
9
9
1
1
Complete
Chiral checks - OK
THR 5(C)
8
8
1
1
Complete
Chiral checks - OK
PHE 6(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 7(C)
5
-
-
-
Residue too small to validate
TRP 8(C)
15
15
1
1
Complete
Chiral checks - OK
CYS 9(C)
7
7
1
1
Complete
Chiral checks - OK
PHE 10(C)
12
12
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ARG 1(C)
-
0
PHE 2(C)
-
0
PRO 3(C)
-
0
LEU 4(C)
O: OXT
1
THR 5(C)
-
0
PHE 6(C)
O: OXT
1
GLY 7(C)
-
0
TRP 8(C)
-
0
CYS 9(C)
O: OXT
1
PHE 10(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand ARG-PHE-PRO-LEU-THR-PHE-GLY-TRP-CYS-PHE
List of
interactions
ARG 1(C) to PHE 10(C)
(also representing equivalent ligand ARG 1(H) to PHE 10(H) )
