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PDBsum entry 3vb4
Go to PDB code:
Ligand/metal interactions
PDB id
3vb4
2 instances of ligand highlighted
BOC-ALA-VAL-LEU-
0JU
Ligands
BOC-ALA-VAL-LEU-
0JU
×2
BOC 1(E) to 0JU 5(E)
EDO
×8
EDO 401(A)
EDO 402(A)
EDO 403(A)
EDO 401(B)
EDO 402(B)
EDO 403(B)
EDO 405(B)
EDO 406(B)
GOL
GOL 404(B)
Ligand
BOC-ALA-VAL-LEU-0JU
BOC
-
Tert-Butyl hydrogen carbonate
Formula:
C
5
H
10
O
3
0JU
-
(4s,5z)-4-Amino-5-Iminopentanamide
Formula:
C
5
H
11
N
3
O
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
BOC 1(E)
8
8
1
1
Complete
Chiral checks - OK
ALA 2(E)
6
-
-
-
Residue too small to validate
VAL 3(E)
8
8
1
1
Complete
Chiral checks - OK
LEU 4(E)
9
9
1
1
Complete
Chiral checks - OK
0JU 5(E)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
BOC 1(E)
-
0
ALA 2(E)
-
0
VAL 3(E)
-
0
LEU 4(E)
O: OXT
1
0JU 5(E)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand BOC-ALA-VAL-LEU-0JU
List of
interactions
BOC 1(E) to 0JU 5(E)
(also representing equivalent ligand BOC 1(F) to 0JU 5(F) )
