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PDBsum entry 3th0
Go to PDB code:
Ligand/metal interactions
PDB id
3th0
Ligand highlighted
RAM-MAN-GLA-RAM-
MAN-GLA-PZU-PZU
Ligands
RAM-MAN-GLA-RAM-
MAN-GLA-PZU-PZU
RAM 1(B) to PZU 8(B)
GOL
×3
GOL 801(A)
GOL 802(A)
GOL 803(A)
Ligand
RAM-MAN-GLA-RAM-MAN-GLA-PZU-PZU
RAM
-
Alpha-L-Rhamnopyranose [Alpha-L-Rhamnose; 6-Deoxy-Alpha-L-Mannopyranose; l- Rhamnose; rhamnose]
Formula:
C
6
H
12
O
5
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
GLA
-
Alpha-D-Galactopyranose [Alpha-D-Galactose; d-Galactose; galactose; alpha d- Galactose]
Formula:
C
6
H
12
O
6
PZU
-
Alpha-D-Paratopyranose [Alpha-D-Paratose; 3,6-Dideoxy-Alpha-D-Ribo- Hexopyranose; 3,6-Dideoxy-Alpha-D-Glucopyranose; 3,6- Dideoxy-Alpha-D-Allopyranose; 3-Deoxy-Alpha-D- Quinovopyranose; d-Paratose; paratose]
Formula:
C
6
H
12
O
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
RAM 1(B)
11
11
0
0
Complete
Chiral checks - OK
MAN 2(B)
12
12
1
0
Complete
Chiral checks - OK
GLA 3(B)
12
12
1
0
Complete
Chiral checks - OK
RAM 4(B)
11
11
1
0
Complete
Chiral checks - OK
MAN 5(B)
12
12
1
0
Complete
Chiral checks - OK
GLA 6(B)
12
12
1
0
Complete
Chiral checks - OK
PZU 7(B)
10
10
1
0
Complete
Chiral checks - OK
PZU 8(B)
10
10
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand RAM-MAN-GLA-RAM-MAN-GLA-PZU-PZU
List of
interactions
RAM 1(B) to PZU 8(B)
