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PDBsum entry 3sjv
Go to PDB code:
Ligand/metal interactions
PDB id
3sjv
4 instances of ligand highlighted
PHE-LEU-ARG-GLY-
ARG-ALA-TYR-GLY-
LEU
Ligands
PHE-LEU-ARG-GLY-
ARG-ALA-TYR-GLY-
LEU
×4
PHE 1(C) to LEU 9(C)
Ligand
PHE-LEU-ARG-GLY-ARG-ALA-TYR-GLY-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PHE 1(C)
12
12
1
1
Complete
Chiral checks - OK
LEU 2(C)
9
9
1
1
Complete
Chiral checks - OK
ARG 3(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 4(C)
5
-
-
-
Residue too small to validate
ARG 5(C)
12
12
1
1
Complete
Chiral checks - OK
ALA 6(C)
6
-
-
-
Residue too small to validate
TYR 7(C)
13
13
1
1
Complete
Chiral checks - OK
GLY 8(C)
5
-
-
-
Residue too small to validate
LEU 9(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
PHE 1(C)
-
0
LEU 2(C)
O: OXT
1
ARG 3(C)
O: OXT
1
GLY 4(C)
-
0
ARG 5(C)
-
0
ALA 6(C)
-
0
TYR 7(C)
O: OXT
1
GLY 8(C)
-
0
LEU 9(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
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Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand PHE-LEU-ARG-GLY-ARG-ALA-TYR-GLY-LEU
List of
interactions
PHE 1(C) to LEU 9(C)
also representing 3 other equivalent ligands:
PHE 1(H) to LEU 9(H)
PHE 1(M) to LEU 9(M)
PHE 1(R) to LEU 9(R)
