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PDBsum entry 3omh
Go to PDB code:
Ligand/metal interactions
PDB id
3omh
3 instances of ligand highlighted
ASP-GLY-GLU-GLU-
PTR-ASP-ASP-PRO-
PHE
Ligands
ASP-GLY-GLU-GLU-
PTR-ASP-ASP-PRO-
PHE
×3
ASP 390(E) to PHE 398(E)
ASP-GLY-GLU-GLU-
PTR-ASP-ASP-PRO
ASP 390(H) to PRO 397(H)
Ligand
ASP-GLY-GLU-GLU-PTR-ASP-ASP-PRO-PHE
-
O-Phosphotyrosine
[Phosphonotyrosine]
Formula:
C
9
H
12
NO
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ASP 390(E)
9
9
1
1
Complete
Chiral checks - OK
GLY 391(E)
5
-
-
-
Residue too small to validate
GLU 392(E)
10
10
1
1
Complete
Chiral checks - OK
GLU 393(E)
10
10
1
1
Complete
Chiral checks - OK
PTR 394(E)
17
17
1
1
Complete
Chiral checks - OK
ASP 395(E)
9
9
1
1
Complete
Chiral checks - OK
ASP 396(E)
9
9
1
1
Complete
Chiral checks - OK
PRO 397(E)
8
8
1
1
Complete
Chiral checks - OK
PHE 398(E)
12
12
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ASP 390(E)
-
0
GLY 391(E)
-
0
GLU 392(E)
O: OXT
1
GLU 393(E)
-
0
PTR 394(E)
O: OXT
|
O3P: O1P
|
O1P: O2P
3
ASP 395(E)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
ASP 396(E)
OD2: OD1
|
OD1: OD2
2
PRO 397(E)
-
0
PHE 398(E)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ASP-GLY-GLU-GLU-PTR-ASP-ASP-PRO-PHE
List of
interactions
ASP 390(E) to PHE 398(E)
also representing 2 other equivalent ligands:
ASP 390(F) to PHE 398(F)
ASP 390(G) to PHE 398(G)
