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PDBsum entry 3jb9
Go to PDB code:
Ligand/metal interactions
PDB id
3jb9
Ligand highlighted
GDP
Ligands
GDP
GDP 1000(B)
ADP
ADP 1500(X)
Metals
_MG
×4
MG 104(N)
MG 101(N)
MG 102(N)
MG 103(N)
_ZN
×7
ZN 501(Y)
ZN 402(a)
ZN 701(c)
ZN 203(e)
ZN 401(a)
ZN 201(e)
ZN 202(e)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 1000(B)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GDP 1000(B)
O2B: O1B
|
O1B: O2B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 1000(B)
_MG
×4
_ZN
×7
