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PDBsum entry 3gl6
Go to PDB code:
Ligand/metal interactions
PDB id
3gl6
Ligand highlighted
ALA-ARG-THR-M3L-
GLN-THR-ALA-ARG
Ligands
ALA-ARG-THR-M3L-
GLN-THR-ALA-ARG
ALA 1(B) to ARG 8(B)
Metals
_ZN
×3
ZN 3(A)
ZN 1(A)
ZN 2(A)
Ligand
ALA-ARG-THR-M3L-GLN-THR-ALA-ARG
-
N-Trimethyllysine
Formula:
C
9
H
21
N
2
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(B)
6
-
-
-
-
-
-
-
-
-
ARG 2(B)
12
12
1
1
0
0
0
0
0
0
THR 3(B)
8
8
1
1
0
0
0
0
0
0
M3L 4(B)
13
13
1
1
0
0
0
0
0
0
GLN 5(B)
10
10
1
1
0
0
0
0
0
0
THR 6(B)
8
8
1
1
0
0
0
0
0
0
ALA 7(B)
6
-
-
-
-
-
-
-
-
-
ARG 8(B)
12
11
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(B)
-
0
ARG 2(B)
-
0
THR 3(B)
-
0
M3L 4(B)
O: OXT
1
GLN 5(B)
O: OXT
1
THR 6(B)
-
0
ALA 7(B)
-
0
ARG 8(B)
O: OXT
1
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product succinate with similarity 50.00%
LIGPLOT
of interactions involving ligand ALA-ARG-THR-M3L-GLN-THR-ALA-ARG
List of
interactions
ALA 1(B) to ARG 8(B)
_ZN
×3
