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PDBsum entry 3d1f
Go to PDB code:
Ligand/metal interactions
PDB id
3d1f
2 instances of ligand highlighted
SER-GLU-GLN-VAL-
GLU-LEU-GLU-PHE-
ASP
Ligands
SER-GLU-GLN-VAL-
GLU-LEU-GLU-PHE-
ASP
×2
SER 2(P) to ASP 10(P)
PEG
×2
PEG 367(A)
PEG 368(A)
323
×2
323 1(P)
Ligand
SER-GLU-GLN-VAL-GLU-LEU-GLU-PHE-ASP
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
SER 2(P)
7
6
0
0
1
0
-
-
-
-
GLU 3(P)
10
10
1
1
0
0
0
0
0
0
GLN 4(P)
10
10
1
1
0
0
0
0
0
0
VAL 5(P)
8
8
1
1
0
0
0
0
0
0
GLU 6(P)
10
10
1
1
0
0
0
0
0
0
LEU 7(P)
9
9
1
1
0
0
0
0
0
0
GLU 8(P)
10
10
1
1
0
0
0
0
0
0
PHE 9(P)
12
12
1
1
0
0
0
0
0
0
ASP 10(P)
9
9
0
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
SER 2(P)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
GLU 3(P)
O: OXT
1
GLN 4(P)
-
0
VAL 5(P)
-
0
GLU 6(P)
OE2: OE1
|
OE1: OE2
2
LEU 7(P)
O: OXT
1
GLU 8(P)
-
0
PHE 9(P)
O: OXT
1
ASP 10(P)
OXT: O
|
OD2: OD1
|
OD1: OD2
|
O: OXT
4
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand SER-GLU-GLN-VAL-GLU-LEU-GLU-PHE-ASP
List of
interactions
SER 2(P) to ASP 10(P)
(also representing equivalent ligand SER 2(Q) to ASP 10(Q) )
