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PDBsum entry 3cyy
Go to PDB code:
Ligand/metal interactions
PDB id
3cyy
2 instances of ligand highlighted
ARG-PRO-ARG-PRO-
ASP-ASP-LEU-GLU-
ILE
Ligands
ARG-PRO-ARG-PRO-
ASP-ASP-LEU-GLU-
ILE
×2
ARG 1(C) to ILE 9(C)
Ligand
ARG-PRO-ARG-PRO-ASP-ASP-LEU-GLU-ILE
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 1(C)
12
12
1
1
Complete
Chiral checks - OK
PRO 2(C)
8
8
1
1
Complete
Chiral checks - OK
ARG 3(C)
12
12
1
1
Complete
Chiral checks - OK
PRO 4(C)
8
8
1
1
Complete
Chiral checks - OK
ASP 5(C)
9
9
1
1
Complete
Chiral checks - OK
ASP 6(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 7(C)
9
9
1
1
Complete
Chiral checks - OK
GLU 8(C)
10
10
1
1
Complete
Chiral checks - OK
ILE 9(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ARG 1(C)
O: OXT
1
PRO 2(C)
-
0
ARG 3(C)
-
0
PRO 4(C)
-
0
ASP 5(C)
-
0
ASP 6(C)
O: OXT
1
LEU 7(C)
-
0
GLU 8(C)
-
0
ILE 9(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
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3D Viewers:
LIGPLOT
of interactions involving ligand ARG-PRO-ARG-PRO-ASP-ASP-LEU-GLU-ILE
List of
interactions
ARG 1(C) to ILE 9(C)
(also representing equivalent ligand ARG 1(D) to ILE 9(D) )
