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PDBsum entry 3cig
Go to PDB code:
Ligand/metal interactions
PDB id
3cig
2 instances of ligand highlighted
NAG-NDG
Ligands
NAG-NDG
×2
NAG 1(B) to NDG 2(B)
NAG 1(E) to NDG 2(E)
NAG-NAG-FUL
NAG 1(C) to FUL 3(C)
NAG-NAG
×2
NAG 1(D) to NAG 2(D)
NAG 1(H) to NAG 2(H)
NAG-NDG-MAN-BMA-
MAN
NAG 1(F) to MAN 5(F)
NAG-NDG-BMA-FUL
NAG 1(G) to FUL 4(G)
NAG
×4
NAG 724(A)
NAG 1961(A)
NAG 6621(A)
NAG 6671(A)
FUC
FUC 2916(A)
Ligand
NAG-NDG
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(B)
15
15
1
1
Complete
Chiral checks - OK
NDG 2(B)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NDG
List of
interactions
NAG 1(B) to NDG 2(B)
