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PDBsum entry 3ay4
Go to PDB code:
Ligand/metal interactions
PDB id
3ay4
2 instances of ligand highlighted
NAG-NAG-BMA-MAN-
NAG-GAL-MAN-NAG
Ligands
NAG-NAG-BMA-MAN-
NAG-GAL-MAN-NAG
×2
NAG 1(D) to NAG 8(D)
NAG-NAG-BMA-MAN-
NAG-MAN-NAG-FUC
NAG 1(F) to FUC 8(F)
NAG-NAG-BMA
NAG 1(G) to BMA 3(G)
Ligand
NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(D)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(D)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(D)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(D)
12
12
1
0
Complete
Chiral checks - OK
NAG 5(D)
15
15
1
0
Complete
Chiral checks - OK
GAL 6(D)
12
12
1
0
Complete
Chiral checks - OK
MAN 7(D)
12
12
1
0
Complete
Chiral checks - OK
NAG 8(D)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG
List of
interactions
NAG 1(D) to NAG 8(D)
(also representing equivalent ligand NAG 1(E) to NAG 8(E) )
