PDBsum entry 2vms

Ligand/metal interactions

PDB id

2vms

Ligands

GLY-PLP

GLY 502(A) to PLP 501(A)

MPD

MPD 701(A)

PO4

PO4 801(A)

Ligand GLY-PLP - Pyridoxal-5'-Phosphate
[Vitamin b6 phosphate]
Formula: C₈H₁₀NO₆P

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
PLP 501(A)	16	16	1	1	Complete		Chiral checks - OK
GLY 502(A)	5	-	-	-	Residue too small to validate

Advanced Analysis

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Ligand matches this enzyme's cofactor pyridoxal 5'-phosphate with similarity 93.75%

LIGPLOT of interactions involving ligand GLY-PLP

List of
interactions

GLY 502(A) to PLP 501(A)