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PDBsum entry 2vkn
Go to PDB code:
Ligand/metal interactions
PDB id
2vkn
Ligand highlighted
LYS-PRO-LEU-PRO-
PRO-LEU-PRO-LEU-
ALA
Ligands
LYS-PRO-LEU-PRO-
PRO-LEU-PRO-LEU-
ALA
LYS 3(C) to ALA 11(C)
SO4
×3
SO4 1067(A)
SO4 1012(C)
SO4 1013(C)
Ligand
LYS-PRO-LEU-PRO-PRO-LEU-PRO-LEU-ALA
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 3(C)
10
10
1
1
Complete
Chiral checks - OK
PRO 4(C)
8
8
1
1
Complete
Chiral checks - OK
LEU 5(C)
9
9
1
1
Complete
Chiral checks - OK
PRO 6(C)
8
8
1
1
Complete
Chiral checks - OK
PRO 7(C)
8
8
1
1
Complete
Chiral checks - OK
LEU 8(C)
9
9
1
1
Complete
Chiral checks - OK
PRO 9(C)
8
8
1
1
Complete
Chiral checks - OK
LEU 10(C)
9
9
1
1
Complete
Chiral checks - OK
ALA 11(C)
6
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
LYS 3(C)
-
0
PRO 4(C)
-
0
LEU 5(C)
O: OXT
1
PRO 6(C)
-
0
PRO 7(C)
-
0
LEU 8(C)
O: OXT
1
PRO 9(C)
-
0
LEU 10(C)
-
0
ALA 11(C)
-
0
Additional Information
Validation carried out using
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Validator
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of interactions involving ligand LYS-PRO-LEU-PRO-PRO-LEU-PRO-LEU-ALA
List of
interactions
LYS 3(C) to ALA 11(C)
