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PDBsum entry 2vdq
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Top Page protein ligands metals Protein-protein interface(s) links
Ligand/metal interactions PDB id
2vdq
Ligand highlighted
ALA-LYS-GLN-ARG-
GLY-ASP-VAL
Ligands
ALA-LYS-GLN-ARG-
GLY-ASP-VAL
ALA 405(C) to VAL 411(C)
NAG-NAG-MAN-MAN-
MAN
NAG 1(D) to MAN 5(D)
NAG-NAG-MAN-MAN-
MAN-MAN-MAN
NAG 1(E) to MAN 7(E)
GOL ×2
GOL 1453(A)
GOL 1462(B)
NAG ×3
NAG 3015(A)
NAG 3249(A)
NAG 3099(B)
Metals
_CA ×6
CA 2004(A)
CA 2005(A)
CA 2006(A)
CA 2007(A)
CA 2002(B)
CA 2003(B)
_MG
MG 2001(B)
  
Ligand ALA-LYS-GLN-ARG-GLY-ASP-VAL
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
ALA 405(C) 6 - - - Residue too small to validate
LYS 406(C) 10 10 1 1 Complete Chiral checks - OK
GLN 407(C) 10 10 1 1 Complete Chiral checks - OK
ARG 408(C) 12 12 1 1 Complete Chiral checks - OK
GLY 409(C) 5 - - - Residue too small to validate
ASP 410(C) 9 9 1 1 Complete Chiral checks - OK
VAL 411(C) 8 8 0 0 Complete Chiral checks - OK
Advanced Analysis
Residue Name Mismatches Count
ALA 405(C) - 0
LYS 406(C) O: OXT 1
GLN 407(C) - 0
ARG 408(C) O: OXT 1
GLY 409(C) - 0
ASP 410(C) O: OXT 1
VAL 411(C) - 0
Additional Information
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LIGPLOT of interactions involving ligand ALA-LYS-GLN-ARG-GLY-ASP-VAL

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List of
interactions
 

ALA 405(C) to VAL 411(C)
  
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