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PDBsum entry 2ogi
Go to PDB code:
Ligand/metal interactions
PDB id
2ogi
2 instances of ligand highlighted
GDP
Ligands
GDP
×2
GDP 400(A)
MES
MES 401(B)
Metals
_FE
×4
FE 301(A)
FE 302(A)
_CL
×3
CL 303(A)
CL 304(A)
CL 305(A)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 400(A)
28
28
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product ADP with similarity 96.43%
LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 400(A)
(also representing equivalent ligand GDP 400(B) )
_FE
×4
_CL
×3
