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PDBsum entry 2o9k
Go to PDB code:
Ligand/metal interactions
PDB id
2o9k
Ligand highlighted
ALA-ARG-THR-MLY-
GLN-THR
Ligands
ALA-ARG-THR-MLY-
GLN-THR
ALA 1(B) to THR 6(B)
ALA-ARG-THR-MLY-
GLN
ALA 1(D) to GLN 5(D)
Ligand
ALA-ARG-THR-MLY-GLN-THR
-
N-Dimethyl-Lysine
Formula:
C
8
HNN
2
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(B)
6
-
-
-
-
-
-
-
-
-
ARG 2(B)
12
12
1
1
0
0
0
0
0
0
THR 3(B)
8
8
1
1
0
0
0
0
0
0
MLY 4(B)
12
12
1
1
0
0
0
0
0
0
GLN 5(B)
10
10
1
1
0
0
0
0
0
0
THR 6(B)
8
7
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(B)
-
0
ARG 2(B)
O: OXT
1
THR 3(B)
-
0
MLY 4(B)
-
0
GLN 5(B)
O: OXT
1
THR 6(B)
O: OXT
1
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-ARG-THR-MLY-GLN-THR
List of
interactions
ALA 1(B) to THR 6(B)
