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PDBsum entry 2n7b
Go to PDB code:
Ligand/metal interactions
PDB id
2n7b
Ligand highlighted
NAG-G6S-SIA-FUC
Ligands
NAG-G6S-SIA-FUC
NAG 1(B) to FUC 4(B)
0D8
0D8 201(A)
Ligand
NAG-G6S-SIA-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
G6S
-
6-O-Sulfo-Beta-D-Galactopyranose [D-Galactose-6-Sulfate; 6-O-Sulfo-Beta-D-Galactose; 6-O- Sulfo-D-Galactose; 6-O-Sulfo-Galactose]
Formula:
C
6
H
12
O
9
S
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
19
NO
9
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(B)
15
15
1
0
Complete
Chiral checks - OK
G6S 2(B)
16
16
1
0
Complete
Chiral checks - OK
SIA 3(B)
21
21
1
0
Complete
Chiral checks - OK
FUC 4(B)
11
11
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
NAG 1(B)
-
0
G6S 2(B)
O9: O8
|
O8: O9
2
SIA 3(B)
-
0
FUC 4(B)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-G6S-SIA-FUC
List of
interactions
NAG 1(B) to FUC 4(B)
