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PDBsum entry 2kp4
Go to PDB code:
Ligand/metal interactions
PDB id
2kp4
Ligand highlighted
GFL-CFL-TAF-A5L-
TAF-A5L-A5L-TAF-
GFL-GFL
Ligands
GFL-CFL-TAF-A5L-
TAF-A5L-A5L-TAF-
GFL-GFL
GFL 1(A) to GFL 10(A)
Ligand
GFL-CFL-TAF-A5L-TAF-A5L-A5L-TAF-GFL-GFL
GFL
-
2-Amino-9-(2-Deoxy-2-Fluoro-5-O-Phosphono-Beta-D- Arabinofuranosyl)-1,9-Dihydro-6h-Purin-6-One [2'-Fluoro-2-Deoxy-Guanosine-5'-Monophosphate]
Formula:
C
10
H
13
FN
5
O
7
P
CFL
-
4-Amino-1-(2-Deoxy-2-Fluoro-5-O-Phosphono-Beta-D- Arabinofuranosyl)pyrimidin-2(1h)-One [2'-Fluoro-2'-Deoxy-Cytidine-5'-Monophosphate]
Formula:
C
9
H
13
FN
3
O
7
P
TAF
-
2'-Deoxy-2'-Fluoro-Arabino-Furanosyl thymine-5'- Phosphate
Formula:
C
10
H
14
FN
2
O
8
P
A5L
-
9-(2-Deoxy-2-Fluoro-5-O-Phosphono-Beta-D- Arabinofuranosyl)-9h-Purin-6-Amine [2'-Deoxy-2'-Fluoro-Arabino-Furanosyl adenine-5'- Phosphate]
Formula:
C
10
H
13
FN
5
O
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GFL 1(A)
24
20
0
0
4
0
-
-
-
-
CFL 2(A)
21
21
1
0
0
0
0
0
0
0
TAF 3(A)
22
22
1
0
0
0
0
0
0
0
A5L 4(A)
23
23
1
0
0
0
0
0
0
0
TAF 5(A)
22
22
1
0
0
0
0
0
0
0
A5L 6(A)
23
23
1
0
0
0
0
0
0
0
A5L 7(A)
23
23
1
0
0
0
0
0
0
0
TAF 8(A)
22
22
1
0
0
0
0
0
0
0
GFL 9(A)
24
24
1
0
0
0
0
0
0
0
GFL 10(A)
24
24
1
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
GFL 1(A)
-
0
CFL 2(A)
-
0
TAF 3(A)
-
0
A5L 4(A)
-
0
TAF 5(A)
-
0
A5L 6(A)
-
0
A5L 7(A)
-
0
TAF 8(A)
-
0
GFL 9(A)
O1P: O3P
|
O2P: O1P
2
GFL 10(A)
O1P: O3P
|
O2P: O1P
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand GFL-CFL-TAF-A5L-TAF-A5L-A5L-TAF-GFL-GFL
List of
interactions
GFL 1(A) to GFL 10(A)
