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PDBsum entry 2iq7
Go to PDB code:
Ligand/metal interactions
PDB id
2iq7
Ligand highlighted
NAG-NAG-MAN-MAN-
MAN-MAN
Ligands
NAG-NAG-MAN-MAN-
MAN-MAN
NAG 1(H) to MAN 6(H)
NAG-NAG
×6
NAG 1(I) to NAG 2(I)
NAG 1(L) to NAG 2(L)
NAG 1(M) to NAG 2(M)
NAG 1(N) to NAG 2(N)
NAG 1(O) to NAG 2(O)
NAG 1(Q) to NAG 2(Q)
PG4
×6
PG4 3004(A)
PG4 3003(B)
PG4 3002(C)
PG4 3006(D)
PG4 3001(E)
PEG
×3
PEG 3008(B)
PEG 3007(E)
PEG 3009(F)
ACY
ACY 3010(B)
Ligand
NAG-NAG-MAN-MAN-MAN-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(H)
15
15
1
1
0
0
0
0
0
0
NAG 2(H)
15
15
1
0
0
0
0
0
0
0
MAN 3(H)
12
12
1
0
0
0
0
0
1
0
MAN 4(H)
12
12
1
0
0
0
0
0
0
0
MAN 5(H)
12
12
1
0
0
0
0
0
0
0
MAN 6(H)
12
12
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-MAN-MAN-MAN-MAN
List of
interactions
NAG 1(H) to MAN 6(H)
