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PDBsum entry 2fmy
Go to PDB code:
Ligand/metal interactions
PDB id
2fmy
4 instances of ligand highlighted
HEM-IMD
Ligands
HEM-IMD
×4
HEM 300(A) to IMD 301(A)
HEM 1300(B) to IMD 1301(B)
HEM 2300(C) to IMD 2301(C)
HEM 3300(D) to IMD 3301(D)
Ligand
HEM-IMD
HEM
-
Protoporphyrin IX containing fe [Heme]
Formula:
C
34
H
32
FeN
4
O
4
IMD
-
Imidazole
Formula:
C
3
H
5
N
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
HEM 300(A)
43
43
0
0
Complete
Chiral checks - OK
IMD 301(A)
5
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
HEM 300(A)
O2D: O1D
|
O1D: O2D
2
IMD 301(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand HEM-IMD
List of
interactions
HEM 300(A) to IMD 301(A)
