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PDBsum entry 1vad
Go to PDB code:
Ligand/metal interactions
PDB id
1vad
Ligand highlighted
SER-ARG-ASP-HIS-
SER-ARG-THR-PRO-
MET
Ligands
SER-ARG-ASP-HIS-
SER-ARG-THR-PRO-
MET
SER 1(P) to MET 9(P)
Ligand
SER-ARG-ASP-HIS-SER-ARG-THR-PRO-MET
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
SER 1(P)
7
6
0
0
1
0
-
-
-
-
ARG 2(P)
12
12
1
1
0
0
0
0
0
0
ASP 3(P)
9
9
1
1
0
0
0
0
0
0
HIS 4(P)
11
11
1
1
0
0
0
0
0
0
SER 5(P)
7
7
1
1
0
0
0
0
0
0
ARG 6(P)
12
12
1
1
0
0
0
0
0
0
THR 7(P)
8
8
1
1
0
0
0
0
0
0
PRO 8(P)
8
8
1
1
0
0
0
0
0
0
MET 9(P)
9
9
0
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
SER 1(P)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
ARG 2(P)
-
0
ASP 3(P)
O: OXT
1
HIS 4(P)
O: OXT
1
SER 5(P)
O: OXT
1
ARG 6(P)
-
0
THR 7(P)
-
0
PRO 8(P)
-
0
MET 9(P)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand SER-ARG-ASP-HIS-SER-ARG-THR-PRO-MET
List of
interactions
SER 1(P) to MET 9(P)
