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PDBsum entry 1sl6
Go to PDB code:
Ligand/metal interactions
PDB id
1sl6
6 instances of ligand highlighted
NDG-FUC-GAL
Ligands
NDG-FUC-GAL
×6
NDG 1(G) to GAL 3(G)
Metals
_CA
×24
CA 4(A)
CA 4(B)
CA 4(C)
CA 4(E)
CA 1(A)
CA 2(A)
CA 3(A)
Ligand
NDG-FUC-GAL
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NDG 1(G)
15
15
0
0
Complete
Chiral checks - OK
FUC 2(G)
11
11
1
0
Complete
Chiral checks - OK
GAL 3(G)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NDG-FUC-GAL
List of
interactions
NDG 1(G) to GAL 3(G)
also representing 5 other equivalent ligands:
NDG 1(H) to GAL 3(H)
NDG 1(I) to GAL 3(I)
NDG 1(J) to GAL 3(J)
NDG 1(K) to GAL 3(K)
NDG 1(L) to GAL 3(L)
_CA
×24
