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PDBsum entry 1rvx
Go to PDB code:
Ligand/metal interactions
PDB id
1rvx
6 instances of ligand highlighted
NAG-GAL-SIA
Ligands
NAG-GAL-SIA
×6
NAG 1(M) to SIA 3(M)
NAG
×10
NAG 3017(A)
NAG 3018(A)
NAG 3019(B)
NAG 3020(C)
NAG 3013(I)
Ligand
NAG-GAL-SIA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
9
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(M)
15
14
0
0
1
0
-
-
-
-
GAL 2(M)
12
12
1
0
0
0
0
0
0
0
SIA 3(M)
21
21
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-GAL-SIA
List of
interactions
NAG 1(M) to SIA 3(M)
also representing 5 other equivalent ligands:
NAG 1(N) to SIA 3(N)
NAG 1(O) to SIA 3(O)
NAG 1(P) to SIA 3(P)
NAG 1(Q) to SIA 3(Q)
NAG 1(R) to SIA 3(R)
