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PDBsum entry 1k5g
Go to PDB code:
Ligand/metal interactions
PDB id
1k5g
4 instances of ligand highlighted
GDP
Ligands
GDP
×4
GDP 1250(A)
AF3
×4
AF3 1252(A)
Metals
_MG
×4
MG 1251(A)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 1250(A)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GDP 1250(A)
O3B: O1B
|
O1B: O2B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 1250(A)
also representing 3 other equivalent ligands:
GDP 2250(D)
GDP 3250(G)
GDP 4250(J)
_MG
×4
