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PDBsum entry 1ggd
Go to PDB code:
Ligand/metal interactions
PDB id
1ggd
Ligand highlighted
CYS-GLY-VAL-PRO-
ALA-ILE-GLN-PRO-
VAL-LEU
Ligands
CYS-GLY-VAL-PRO-
ALA-ILE-GLN-PRO-
VAL-LEU
CYS 1(A) to LEU 10(A)
SO4
SO4 401(B)
FAF
FAF 301(C)
Ligand
CYS-GLY-VAL-PRO-ALA-ILE-GLN-PRO-VAL-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
CYS 1(A)
7
7
1
1
Complete
Chiral checks - OK
GLY 2(A)
5
-
-
-
Residue too small to validate
VAL 3(A)
8
8
1
1
Complete
Chiral checks - OK
PRO 4(A)
8
8
1
1
Complete
Chiral checks - OK
ALA 5(A)
6
-
-
-
Residue too small to validate
ILE 6(A)
9
9
1
1
Complete
Chiral checks - OK
GLN 7(A)
10
10
1
1
Complete
Chiral checks - OK
PRO 8(A)
8
8
1
1
Complete
Chiral checks - OK
VAL 9(A)
8
8
1
1
Complete
Chiral checks - OK
LEU 10(A)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
CYS 1(A)
-
0
GLY 2(A)
-
0
VAL 3(A)
-
0
PRO 4(A)
-
0
ALA 5(A)
-
0
ILE 6(A)
-
0
GLN 7(A)
O: OXT
1
PRO 8(A)
-
0
VAL 9(A)
-
0
LEU 10(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
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Validator
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3D Viewers:
LIGPLOT
of interactions involving ligand CYS-GLY-VAL-PRO-ALA-ILE-GLN-PRO-VAL-LEU
List of
interactions
CYS 1(A) to LEU 10(A)
