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PDBsum entry 1fv3
Go to PDB code:
Ligand/metal interactions
PDB id
1fv3
2 instances of ligand highlighted
BGC-GAL-NGA-GAL-
SIA-SLB-SIA
Ligands
BGC-GAL-NGA-GAL-
SIA-SLB-SIA
×2
BGC 1(C) to SIA 7(C)
CEQ
×2
CEQ 8(A)
CEQ 8(B)
PO4
PO4 301(B)
Ligand
BGC-GAL-NGA-GAL-SIA-SLB-SIA
BGC
-
Beta-D-Glucopyranose [Beta-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
NGA
-
2-Acetamido-2-Deoxy-Beta-D-Galactopyranose [N-Acetyl-Beta-D-Galactosamine; 2-Acetamido-2-Deoxy- Beta-D-Galactose; 2-Acetamido-2-Deoxy-D-Galactose; 2- Acetamido-2-Deoxy-Galactose; n-Acetyl-D-Galactosamine]
Formula:
C
8
H
15
NO
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
9
NO
9
SLB
-
N-Acetyl-Beta-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; o-Sialic acid; 5- N-Acetyl-Beta-D-Neuraminic acid; beta-Sialic acid]
Formula:
C
11
H
9
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
BGC 1(C)
12
12
0
0
Complete
Chiral checks - OK
GAL 2(C)
12
12
1
0
Complete
Chiral checks - OK
NGA 3(C)
15
15
1
0
Complete
Chiral checks - OK
GAL 4(C)
12
12
1
0
Complete
Chiral checks - OK
SIA 5(C)
21
21
1
0
Complete
Chiral checks - OK
SLB 6(C)
21
21
1
0
Complete
Chiral checks - OK
SIA 7(C)
21
21
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand BGC-GAL-NGA-GAL-SIA-SLB-SIA
List of
interactions
BGC 1(C) to SIA 7(C)
(also representing equivalent ligand BGC 1(D) to SIA 7(D) )
