PDBsum entry 1flc

Ligand/metal interactions

PDB id

1flc


	11 instances of ligand highlighted
	NAG-NAG-BMA

Ligands

NAG-NAG-BMA ×11

NAG 1(G) to BMA 3(G)

NAG-NDG-MAN ×3

NAG-NDG-BMA

Ligand NAG-NAG-BMA

NAG - 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine] Formula: C₈H₁₅NO₆

BMA - Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose] Formula: C₆H₁₂O₆

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
NAG 1(G)	15	15	1	1	0	0	0	0	1	0
NAG 2(G)	15	15	1	0	0	0	0	0	0	0
BMA 3(G)	12	12	1	0	0	0	0	0	0	0

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Het Group NAG matches this enzyme's product N-acetylneuraminate with similarity 59.09%

LIGPLOT of interactions involving ligand NAG-NAG-BMA

List of
interactions

NAG 1(G) to BMA 3(G)

also representing 2 other equivalent ligands:
NAG 1(L) to BMA 3(L)
NAG 1(Q) to BMA 3(Q)