PDBsum entry 1ekh

Ligand/metal interactions

PDB id

1ekh


	2 instances of ligand highlighted
	2GL-1GL

Ligands

2GL-1GL ×2

2GL 1(C) to 1GL 2(C)

DDA-DDA-ERI ×2

CPH ×2

Metals

_CO

CO 41(A)

Ligand 2GL-1GL

2GL - 4-O-Acetyl-2,6-Dideoxy-Beta-D-Galactopyranose [4-O-Acetyl-2,6-Dideoxy-Alpha-D-Galacto-Hexopyranose; 4- O-Acetyl-2,6-Dideoxy-Beta-D-Galactose; 4-O-Acetyl-2,6- Dideoxy-D-Galactose; 4-O-Acetyl-2,6-Dideoxy-Galactose] Formula: C₈H₁₄O₅

1GL - 2,6-Dideoxy-4-O-Methyl-Alpha-D-Galactopyranose [4-O-Methyl-2,6-Dideoxy-Alpha-D-Galacto-Hexopyranose; 2- Deoxy-4-O-Methyl-Alpha-D-Fucopyranose; 2,6-Dideoxy-4- O-Methyl-Alpha-D-Galactose; 2,6-Dideoxy-4-O-Methyl-D- Galactose; 2,6-Dideoxy-4-O-Methyl-Galactose] Formula: C₇H₁₄O₄

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
2GL 1(C)	13	13	0	0	Complete		Chiral checks - OK
1GL 2(C)	11	11	1	0	Complete		Chiral checks - OK

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

Use mouse to move/zoom
3D Viewers:

LIGPLOT of interactions involving ligand 2GL-1GL

List of
interactions

2GL 1(C) to 1GL 2(C)