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PDBsum entry 1bqh
Go to PDB code:
Ligand/metal interactions
PDB id
1bqh
2 instances of ligand highlighted
ARG-GLY-TYR-VAL-
TYR-GLN-GLY-LEU
Ligands
ARG-GLY-TYR-VAL-
TYR-GLN-GLY-LEU
×2
ARG 1(C) to LEU 8(C)
NAG
×4
NAG 130(G)
Ligand
ARG-GLY-TYR-VAL-TYR-GLN-GLY-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 1(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 2(C)
5
-
-
-
Residue too small to validate
TYR 3(C)
13
13
1
1
Complete
Chiral checks - OK
VAL 4(C)
8
8
1
1
Complete
Chiral checks - OK
TYR 5(C)
13
13
1
1
Complete
Chiral checks - OK
GLN 6(C)
10
10
1
1
Complete
Chiral checks - OK
GLY 7(C)
5
-
-
-
Residue too small to validate
LEU 8(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ARG 1(C)
-
0
GLY 2(C)
-
0
TYR 3(C)
O: OXT
1
VAL 4(C)
-
0
TYR 5(C)
O: OXT
1
GLN 6(C)
O: OXT
1
GLY 7(C)
-
0
LEU 8(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ARG-GLY-TYR-VAL-TYR-GLN-GLY-LEU
List of
interactions
ARG 1(C) to LEU 8(C)
(also representing equivalent ligand ARG 1(F) to LEU 8(F) )
