PDBsum entry 1arh

Ligand/metal interactions

PDB id

1arh


	2 instances of ligand highlighted
	PPD

Ligands

PPD ×2

PPD 411(A)

Ligand PPD - 2-[(3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4-
Ylmethylene)-Amino]-Succinic acid
[Pyridoxyl-Aspartic acid-5-Monophosphate]
Formula: C₁₂H₁₇N₂O₉P

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
PPD 411(A)	24	24	0	0	Complete		Chiral checks - OK

Advanced Analysis

Residue	Name Mismatches	Count
PPD 411(A)	OD2: OD1\|OD1: OD2	2

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Ligand matches this enzyme's cofactor pyridoxal 5'-phosphate with similarity 60.00%

LIGPLOT of interactions involving ligand PPD

List of
interactions

PPD 411(A)

(also representing equivalent ligand PPD 411(B) )