PDBsum entry 1afc

Ligand/metal interactions

PDB id

1afc


	8 instances of ligand highlighted
	GU4-YYJ

Ligands

GU4-YYJ ×8

GU4 1(I) to YYJ 2(I)

Ligand GU4-YYJ

GU4 - 2,3,4,6-Tetra-O-Sulfonato-Alpha-D-Glucopyranose [2,3,4,6-Tetra-O-Sulfonato-Alpha-D-Glucose; 2,3,4,6- Tetra-O-Sulfonato-D-Glucose; 2,3,4,6-Tetra-O- Sulfonato-Glucose] Formula: C₆H₁₂O₁₈S₄

YYJ - 1,3,4,6-Tetra-O-Sulfo-Beta-D-Fructofuranose Formula: C₆H₁₂O₁₈S₄

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
GU4 1(I)	28	28	1	0	Complete		Chiral checks - OK
YYJ 2(I)	28	28	0	0	Complete		Chiral checks - OK

Advanced Analysis

Residue	Name Mismatches	Count
GU4 1(I)	O21: O22\|O23: O21\|O24: O26\|O25: O24\|O27: O28...	8
YYJ 2(I)	O3S1: O2S1\|O3S6: O2S6\|O2S1: O3S1\|O2S6: O3S6	4

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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LIGPLOT of interactions involving ligand GU4-YYJ

List of
interactions

GU4 1(I) to YYJ 2(I)

also representing 7 other equivalent ligands:
GU4 1(J) to YYJ 2(J)
GU4 1(K) to YYJ 2(K)
GU4 1(L) to YYJ 2(L)
GU4 1(M) to YYJ 2(M)
GU4 1(N) to YYJ 2(N)
GU4 1(O) to YYJ 2(O)
GU4 1(P) to YYJ 2(P)