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PDBsum entry 176d
Go to PDB code:
Ligand/metal interactions
PDB id
176d
Ligand highlighted
GPN-APN-APN-CPN-
TPN-CPN
Ligands
GPN-APN-APN-CPN-
TPN-CPN
GPN 1(A) to CPN 6(A)
Ligand
GPN-APN-APN-CPN-TPN-CPN
GPN
-
2-Aminoethylglycine-Carbonylmethylene-Guanine
Formula:
C
11
H
16
N
7
O
4
APN
-
2-Aminoethylglycine-Carbonylmethylene-Adenine
Formula:
C
11
H
16
N
7
O
3
CPN
-
2-Aminoethylglycine-Carbonylmethylene-Cytosine
Formula:
C
10
H
16
N
5
O
4
TPN
-
2-Aminoethylglycine-Carbonylmethylene-Thymine
Formula:
C
11
H
17
N
4
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GPN 1(A)
22
22
1
1
Complete
Chiral checks - OK
APN 2(A)
21
21
1
1
Complete
Chiral checks - OK
APN 3(A)
21
21
1
1
Complete
Chiral checks - OK
CPN 4(A)
19
19
1
1
Complete
Chiral checks - OK
TPN 5(A)
20
20
1
1
Complete
Chiral checks - OK
CPN 6(A)
19
19
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GPN 1(A)
-
0
APN 2(A)
-
0
APN 3(A)
-
0
CPN 4(A)
O1': OXT
1
TPN 5(A)
O1': OXT
1
CPN 6(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand GPN-APN-APN-CPN-TPN-CPN
List of
interactions
GPN 1(A) to CPN 6(A)
