Figure 3 - full size

Figure 3.
Figure 3. Electrostatic surface of LC1 and proposed heavy chain binding site. a, Two views (related by 90° rotation about the y-axis) of the electrostatic surface of LC1 are shown. The hydrophobic patch, which includes Trp 99, Tyr 121 and Leu 146 on the -sheet face, is evident in the view on the right. It is this patch that may be involved in attachment of LC1 to the heavy chain. The opposite surface proposed to interact with p45 (left view) is highly charged, with patches of both acidic and basic residues. The surface potential was calculated using dielectric constants of 30 and 80 for protein and solvent, respectively. The images are oriented with the N-terminus to the top. b, Close up stereo view of the putative heavy chain binding surface. Side chains at positions that are hydrophobic in all family members are shown in green (Trp 99 and Leu 146), whereas hydrophobic side chains at less conserved positions are in yellow (Ile 74, Tyr 102, Val 119 and Tyr 121). Acidic and basic residues that surround the hydrophobic patch are shown in red and blue, respectively. c, The superimposed ribbon structures of LC1 (orange) and U2A' (yellow; accession code 1A9N) are shown to illustrate the structural homology between these two molecules. The r.m.s. deviation for superimposed C atoms is 3.7 Å as determined by DALI (version 2.0)30.