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Figure 2.
Figure 2 Comparison of GBD with a zinc finger. (A) Superposition
of the backbones of 46 GBD structures, Lys145-Val206, in the
absence of the DNA refined by simulated annealing. Different
colors are used for indicating the secondary structural
elements. The N- and C-termini are labeled. (B) A diagrammatic
drawing of the final structure made by energy minimization of
the mean co-ordinates of the ensemble shown in (A), superimposed
on a presentation of electropolarization. Positive charges are
shown in blue and negative charges in red. The side that
recognizes DNA is indicated with an arrow. (C) The 3D structure
and electropolarization of the first zinc finger of SWI5
(Protein Data Bank code 1NCS) shown in the same way as in (B).
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