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PDBsum documentation

  About PDBsum
Brief description of the contents given for each entry.
Top page   Protein page   DNA/RNA   Ligands   Prot-prot   Clefts   Links  
 
  Text search
Description of how to perform simple text searches of the PDB header records.
 
  Using RasMol
How to get RasMol and configure your web browser to enable you to view structural information given in PDBsum in 3D.
 
  PROMOTIF
Description of PROMOTIF secondary structure motifs.
 
  PROSITE patterns
Colour table used for display of PROSITE sequence motifs.
 
  PROCHECK analysis
Plots and print-outs generated by running PROCHECK.

 

 

PDBsum publications

Latest reference

de Beer T A P, Berka K, Thornton J M, Laskowski R A (2014). PDBsum additions. Nucleic Acids Res., 42, D292-D296. [PubMed id: 24153109]

Earlier references

Laskowski R A (2009). PDBsum new things. Nucleic Acids Res., 37, D355-D359. [PubMed id: 18996896]
Laskowski R A, Chistyakov V V, Thornton J M (2005). PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res., 33, D266-D268. [PubMed id: 15608193]
Laskowski R A (2001). PDBsum: summaries and analyses of PDB structures. Nucleic Acids Res., 29, 221-222. [PubMed id: 11125097]
Laskowski R A, Hutchinson E G, Michie A D, Wallace A C, Jones M L, Thornton J M (1997). PDBsum: A Web-based database of summaries and analyses of all PDB structures. Trends Biochem. Sci., 22, 488-490. [PubMed id: 9433130]

Related reference

Laskowski R A (2007). Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature. Bioinformatics, 23, 1824-1827. [PubMed id: 17384425]
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