Correct usage is ... showmain pdb_code template [-l ligand/chain/E.C. no] [-f output_file] [-option option] [{-i | -I} include_file] [-c call-no] [-e] [-enzymes] [-profunc] [-highlights] [-u user-id] [-s start-no] [-code security-code] [-dir dirname] [UPLOAD | MCSG] [-wkdir working_dir] [-score score] [-EBI] [-par1 parameter1] [-par2 parameter2] ... [-par10 parameter10] [-drat] [-drugport] [-sas] [-chain chain_id] [-drug_id DBref] [-uniprot_acc UniProt] [-db database_dat] [-tdir template_dir] [-trdir template_real_dir] [-ligsearch] [-ligand_ranges ranges] [-prop] [-ligplus] [-disastr] [-varsite] [-pdbsum1] [-relinks] where * pdb_code = PDB entry to be displayed * template = Name of template page to be displayed * -l chain/ligand/E.C. no = chain/ligand/E.C. number to be shown * -f output_file = write output to given file rather than to standard output * -option option = switch on appropriate OPTION_XXXX block in the template file * -i include_file = file to be included at the #include line * -I include_file = full path and filename of file to be included at the #include line * -c call number, indicating which menu item has been called and should be highlighted * -s start number, indicating which start number for given group of items * -e = have error in PDB code * -enzymes = pages are for Enzyme Structures Database * -parN parameter N = additional parameters, numbered 1-10 * -profunc = pages are for ProFunc * -highlights = PDBsum highlights page * -u user-id = Identifier for temporary data dir * -code security-code = Password for secure entries * -dir dirname = Name of temporary working directory * UPLOAD = Uploaded PDB file for PDBsum generation * MCSG = MCSG structure * -wkdir working_dir = Name of working directory * -score score = Score required to be passed to some pages * -EBI = Flag indicating that called from EBI PDBsum page * -drat = Flag indicating that called from DraT DB * -drugport = Flag indicating that called from DrugPort * -sas = Flag indicating that called from SAS * -chain chain_id = PDB chain identifier * -drug_id = DrugBank id for DrugPort drug page * -uniprot_acc = UniProt accession for DrugPort target page * -db database_dat = Name and path of database.dat file to be read in at start * -trdir template_dir = Real directory where HTML templates are to be found * -tdir template_dir = Equivalent logical name * -ligsearch = pages are for LigSearch * -ligand_ranges ranges = Ligands selected on ligand clusters page * -prop = proprietary installation of PDBsum * -ligplus = pages are for LigPlus licence system * -disastr = pages are for DisaStr * -varsite = pages are for VarSite * -list = list fields (for debugging) * -pdbsum1 = Standalone version of PDBsum * -relinks = Make all image links relative