_EC 3.5.1.88 Peptide deformylase. 99 PDB entries  
EC 3.-.-.- Hydrolases. [20,887 PDB entries]
EC 3.5.-.- Acting on carbon-nitrogen bonds, other than peptide bonds. [1,652 PDB entries]
EC 3.5.1.- In linear amides. [603 PDB entries]
EC 3.5.1.88 Peptide deformylase. [99 PDB entries]    
1bs4

Reaction: Formyl-L-methionyl peptide + H(2)O = formate + methionyl peptide.
 


Formyl-L-methionyl peptide
+ H(2)O
=
formate
+
methionyl peptide
Molecule diagrams generated from .mol files obtained from the KEGG ftp site.

Other name(s): Pdf. Polypeptide deformylase.
Cofactor(s): Fe(2+).
Comments: Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Differs in substrate specificity from Ec 3.5.1.27 and Ec 3.5.1.31.
Links:   [IntEnz]   [ExPASy]   [KEGG]  

There are 99 PDB entries in enzyme class E.C.3.5.1.88

  PDB code Protein
1bs4
Peptide deformylase as zn2+ containing form (native) in complex with inhibitor polyethylene glycol
Source: Escherichia coli. Organism_taxid: 562. Strain: jm109. Cellular_location: cytoplasma. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B, C (168 residues) CATH domain: 3.90.45.10
1bs5
Peptide deformylase as zn2+ containing form
Source: Escherichia coli. Organism_taxid: 562. Strain: jm109. Cellular_location: cytoplasma. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B, C (168 residues) CATH domain: 3.90.45.10
1bs6
Peptide deformylase as ni2+ containing form in complex with tripeptide met-ala-ser
Source: Escherichia coli. Organism_taxid: 562. Strain: jm109. Cellular_location: cytoplasma. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Other_details: the protein was chemically synthesized
Chains: A, B, C (168 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group SER is 42.00% similar to enzyme product Formate
1bs7
Peptide deformylase as ni2+ containing form
Source: Escherichia coli. Organism_taxid: 562. Strain: jm109. Cellular_location: cytoplasma. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B, C (168 residues) CATH domain: 3.90.45.10
1bs8
Peptide deformylase as zn2+ containing form in complex with tripeptide met-ala-ser
Source: Escherichia coli. Organism_taxid: 562. Strain: jm109. Cellular_location: cytoplasma. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Other_details: the protein was chemically synthesized
Chains: A, B, C (168 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group SER is 42.00% similar to enzyme product Formate
1bsj
Cobalt deformylase inhibitor complex from e.Coli
Source: Escherichia coli. Organism_taxid: 562. Cell_line: bl21(de3)
Chain: A (166 residues) CATH domain: 3.90.45.10
1bsk
Zinc deformylase inhibitor complex from e.Coli
Source: Escherichia coli. Organism_taxid: 562. Cell_line: bl21(de3)
Chain: A (166 residues) CATH domain: 3.90.45.10
1bsz
Peptide deformylase as fe2+ containing form (native) in comp inhibitor polyethylene glycol
Source: Escherichia coli. Organism_taxid: 83333. Strain: k12. Cellular_location: cytoplasm. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B, C (168 residues) CATH domain: 3.90.45.10
1def
Peptide deformylase catalytic core (residues 1-147), nmr, 9 structures
Source: Escherichia coli. Organism_taxid: 562. Strain: pal421tr. Gene: fms (codons 1-147). Expressed in: escherichia coli. Expression_system_taxid: 562. Other_details: puc18 (iptg-inducible lac promoter)
Chain: A (147 residues) CATH domain: 3.90.45.10
1dff
Peptide deformylase
Source: Escherichia coli. Organism_taxid: 562. Expressed in: escherichia coli. Expression_system_taxid: 562. Other_details: the details of the expression may be found in biochemistry 36, 13910 (1997)
Chain: A (164 residues) CATH domain: 3.90.45.10
1g27
Crystal structure of e.Coli polypeptide deformylase complexed with the inhibitor bb-3497
Source: Escherichia coli. Organism_taxid: 562. Gene: def. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chains: A, B, C (164 residues) CATH domain: 3.90.45.10
1g2a
The crystal structure of e.Coli peptide deformylase complexed with actinonin
Source: Escherichia coli. Organism_taxid: 562. Gene: def. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chains: A, B, C (164 residues) CATH domain: 3.90.45.10
1icj
Pdf protein is crystallized as ni2+ containing form, cocryst with inhibitor polyethylene glycol (peg)
Source: Escherichia coli. Organism_taxid: 83333. Strain: k12. Atcc: atcc 10798. Collection: atcc 10798. Cellular_location: cytoplasm. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B, C (168 residues) CATH domain: 3.90.45.10
1ix1
Crystal structure of p.Aeruginosa peptide deformylase complexed with antibiotic actinonin
Source: Pseudomonas aeruginosa. Organism_taxid: 287. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (169 residues) CATH domain: 3.90.45.10
1lm4
Structure of peptide deformylase from staphylococcus aureus
Source: Staphylococcus aureus. Organism_taxid: 1280. Gene: pdf1. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (190 residues) CATH domain: 3.90.45.10
1lm6
Crystal structure of peptide deformylase from streptococcus
Source: Streptococcus pneumoniae. Organism_taxid: 1313. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (191 residues) CATH domain: 3.90.45.10
1lme
Crystal structure of peptide deformylase from thermotoga maritima
Source: Thermotoga maritima. Organism_taxid: 2336. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (154 residues) CATH domain: 3.90.45.10
1lmh
Crystal structure of s. Aureus peptide deformylase
Source: Staphylococcus aureus. Organism_taxid: 1280. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (184 residues) CATH domain: 3.90.45.10
1lqw
Crystal structure of s.Aureus peptide deformylase
Source: Staphylococcus aureus. Organism_taxid: 1280. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B (183 residues) CATH domain: 3.90.45.10
1lqy
Crystal structure of bacillus stearothermophilus peptide deformylase complexed with antibiotic actinonin
Source: Geobacillus stearothermophilus. Organism_taxid: 1422. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: A (184 residues) CATH domain: 3.90.45.10
1lru
Crystal structure of e.Coli peptide deformylase complexed with antibiotic actinonin
Source: Escherichia coli. Organism_taxid: 562. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C (164 residues) CATH domain: 3.90.45.10
1lry
Crystal structure of p. Aeruginosa peptide deformylase complexed with antibiotic actinonin
Source: Pseudomonas aeruginosa. Organism_taxid: 287. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: A (165 residues) CATH domain: 3.90.45.10
1n5n
Crystal structure of peptide deformylase from pseudomonas ae
Source: Pseudomonas aeruginosa. Organism_taxid: 287. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (167 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group GOL is 50.00% similar to enzyme product Formate
1q1y
Crystal structures of peptide deformylase from staphylococcus aureus complexed with actinonin
Source: Staphylococcus aureus. Organism_taxid: 1280. Gene: sa1100. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (186 residues) CATH domain: 3.90.45.10
1rn5
Crystal structure of lipdf
Source: Leptospira interrogans. Bacteria. Gene: def. Expressed in: escherichia coli.
Chains: A, B (177 residues) CATH domain: 3.90.45.10
1s17
Identification of novel potent bicyclic peptide deformylase
Source: Pseudomonas aeruginosa. Organism_taxid: 287. Gene: def, pa0019. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (166 residues) CATH domain: 3.90.45.10
1sv2
Crystal structure of peptide deformylase from leptospira interrogans (lipdf) at ph7.5
Source: Leptospira interrogans. Organism_taxid: 173. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.
Chains: A, B (171 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
1szz
Crystal structure of peptide deformylase from leptospira interrogans complexed with inhibitor actinonin
Source: Leptospira interrogans. Organism_taxid: 173. Gene: def. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.
Chains: A, B, C, D, E, F, G, H (171 residues) CATH domain: 3.90.45.10
1v3y
The crystal structure of peptide deformylase from thermus thermophilus hb8
Source: Thermus thermophilus. Organism_taxid: 274. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (170 residues) CATH domain: 3.90.45.10
1vev
Crystal structure of peptide deformylase from leptospira interrogans (lipdf) at ph6.5
Source: Leptospira interrogans. Organism_taxid: 173. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.
Chains: A, B (171 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
1vey
Crystal structure of peptide deformylase from leptospira interrogans (lipdf) at ph7.0
Source: Leptospira interrogans. Organism_taxid: 173. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.
Chains: A, B (171 residues) CATH domain: 3.90.45.10
1vez
Crystal structure of peptide deformylase from leptospira interrogans(lipdf) at ph8.0
Source: Leptospira interrogans. Organism_taxid: 173. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.
Chains: A, B (172 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
1ws0
Structure analysis of peptide deformylase from bacillus cereus
Source: Bacillus cereus. Organism_taxid: 1396. Gene: def1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (151 residues) CATH domain: 3.90.45.10
1ws1
Structure analysis of peptide deformylase from bacillus cereus
Source: Bacillus cereus. Organism_taxid: 1396. Gene: def1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (151 residues) CATH domain: 3.90.45.10
1xem
High resolution crystal structure of escherichia coli zinc- deformylase bound to formate
Source: Escherichia coli. Organism_taxid: 469008. Strain: bl21(de3)
Chain: A (164 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
1xen
High resolution crystal structure of escherichia coli iron- deformylase bound to formate
Source: Escherichia coli. Organism_taxid: 469008. Strain: bl21(de3)
Chain: A (165 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
1xeo
High resolution crystals structure of cobalt- peptide deform bound to formate
Source: Escherichia coli. Organism_taxid: 469008. Strain: bl21(de3)
Chain: A (165 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
1y6h
Crystal structure of lipdf
Source: Leptospira interrogans. Organism_taxid: 173. Gene: def. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chains: A, B (177 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
1zxz
X-ray structure of peptide deformylase from arabidopsis thaliana (atpdf1a); crystals grown in peg-5000 mme as precipitant
Source: Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: pdf1a. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chains: A, B (192 residues) CATH domain: 3.90.45.10
1zy0
X-ray structure of peptide deformylase from arabidopsis thaliana (atpdf1a); crystals grown in peg-6000
Source: Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: pdf1a. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chains: A, B (191 residues) CATH domain: 3.90.45.10
1zy1
X-ray structure of peptide deformylase from arabidopsis thaliana (atpdf1a) in complex with met-ala-ser
Source: Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: pdf1a. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Synthetic: yes
Chains: A, B (191 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group SER is 42.00% similar to enzyme product Formate
2ai7
S.Pneumoniae polypeptide deformylase complexed with sb- 485345
Source: Streptococcus pneumoniae. Organism_taxid: 1313. Strain: atcc baa-255 r6. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: A (194 residues) CATH domain: 3.90.45.10
2ai8
E.Coli polypeptide deformylase complexed with sb-485343
Source: Escherichia coli. Organism_taxid: 562. Gene: def, fms. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C (166 residues) CATH domain: 3.90.45.10
2ai9
S.Aureus polypeptide deformylase
Source: Staphylococcus aureus. Organism_taxid: 1280. Gene: def, def1, pdf1. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B (183 residues) CATH domain: 3.90.45.10
2aia
S.Pneumoniae pdf complexed with sb-543668
Source: Streptococcus pneumoniae. Organism_taxid: 1313. Strain: atcc baa-255-r6. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: A (192 residues) CATH domain: 3.90.45.10
2aie
S.Pneumoniae polypeptide deformylase complexed with sb- 505684
Source: Streptococcus pneumoniae. Organism_taxid: 1313. Strain: atcc baa-255 r6. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: P (194 residues) CATH domain: 3.90.45.10
2def
Peptide deformylase catalytic core (residues 1-147), nmr, 20 structures
Source: Escherichia coli. Organism_taxid: 562. Strain: pal421tr. Gene: fms (codons 1-147). Expressed in: escherichia coli. Expression_system_taxid: 562. Promotor), pdef-ec1-147.
Chain: A (146 residues) CATH domain: 3.90.45.10
2ew5
Structure of helicobacter pylori peptide deformylase in complex with inhibitor
Source: Helicobacter pylori. Organism_taxid: 210. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (166 residues) CATH domain: 3.90.45.10
2ew6
Structure of helicobacter pylori peptide deformylase in complex with inhibitor
Source: Helicobacter pylori. Organism_taxid: 210. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (166 residues) CATH domain: 3.90.45.10
2ew7
Crystal structure of helicobacter pylori peptide deformylase
Source: Helicobacter pylori. Organism_taxid: 210. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (163 residues) CATH domain: 3.90.45.10
2kmn
Solution structure of peptide deformylase complexed with actinonin
Source: Escherichia coli k-12. Organism_taxid: 83333. Gene: def, fms, b3287, jw3248. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (147 residues) CATH domain: 3.90.45.10
2okl
Crystal structure of peptide deformylase 2 with actinonin fr bacillus cereus
Source: Bacillus cereus. Organism_taxid: 226900. Strain: atcc 14579. Gene: def2. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chains: A, B (185 residues) CATH domain: 3.90.45.10
2os0
Structures of actinonin bound peptide deformylases from e. Faecalis and s. Pyogenes
Source: Enterococcus faecalis. Organism_taxid: 1351. Strain: atcc 700802. Gene: def. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (179 residues) CATH domain: 3.90.45.10
2os1
Structures of actinonin bound peptide deformylases from e. Faecalis and s. Pyogenes
Source: Enterococcus faecalis. Organism_taxid: 1351. Strain: atcc 700802. Gene: def. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (179 residues) CATH domain: 3.90.45.10
2os3
Structures of actinonin bound peptide deformylases from e. Faecalis and s. Pyogenes
Source: Streptococcus pyogenes m1 gas. Organism_taxid: 160490. Strain: atcc 700294. Gene: def. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (205 residues) CATH domain: 3.90.45.10
2vhm
Structure of pdf binding helix in complex with the ribosome (part 1 of 4)
Source: Escherichia coli. Organism_taxid: 562. Strain: mre600. Synthetic: yes. Organism_taxid: 562
Chain: 5 (16 residues)
2w3t
Chloro complex of the ni-form of e.Coli deformylase
Source: Escherichia coli. Organism_taxid: 83333. Strain: k12. Atcc: baa-1025. Expressed in: escherichia coli. Expression_system_taxid: 511693.
Chain: A (167 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group EOH is 50.00% similar to enzyme product Formate
2w3u
Formate complex of the ni-form of e.Coli deformylase
Source: Escherichia coli. Organism_taxid: 83333. Strain: k12. Atcc: baa-1025. Expressed in: escherichia coli. Expression_system_taxid: 511693.
Chain: A (165 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group FMT corresponds to enzyme product Formate
3cmd
Crystal structure of peptide deformylase from vre-e.Faecium
Source: Enterococcus faecium. Streptococcus faecium. Organism_taxid: 1352. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (186 residues) CATH domain: 3.90.45.10
3cpm
Plant peptide deformylase pdf1b crystal structure
Source: Arabidopsis thaliana. Mouse-ear cress. Gene: pdf1b. Expressed in: escherichia coli.
Chain: A (184 residues) CATH domain: 3.90.45.10
3dld
Crystal structure of peptide deformylase, xoo1075, from xanthomonas oryzae pv. Oryzae kacc10331
Source: Xanthomonas oryzae pv. Oryzae. Organism_taxid: 64187. Strain: kacc10331. Gene: def, xoo1075. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chain: A (170 residues) CATH domain: 3.90.45.10
3e3u
Crystal structure of mycobacterium tuberculosis peptide deformylase in complex with inhibitor
Source: Mycobacterium tuberculosis. Organism_taxid: 1773. Gene: def. Expressed in: escherichia coli.
Chain: A (196 residues) CATH domain: 3.90.45.10
3fwx
The crystal structure of the peptide deformylase from vibrio o1 biovar el tor str. N16961
Source: Vibrio cholerae o395. Organism_taxid: 345073. Strain: str. N16961. Gene: def-1, gi:15640078, vc0395_a2473. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (165 residues) CATH domain: 3.90.45.10
3g5k
Structure and activity of human mitochondrial peptide deform novel cancer target
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pdf, pdf1a. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C, D (183 residues) CATH domain: 3.90.45.10
3g5p
Structure and activity of human mitochondrial peptide deform novel cancer target
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pdf, pdf1a. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C, D (183 residues) CATH domain: 3.90.45.10
3g6n
Crystal structure of an efpdf complex with met-ala-ser
Source: Enterococcus faecium. Organism_taxid: 1352. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Other_details: this is tripeptide. The author purchased from sigam company
Chains: A, B (183 residues) CATH domain: 3.90.45.10
3k6l
The structure of e.Coli peptide deformylase (pdf) in complex with peptidomimetic ligand bb2827
Source: Escherichia coli k-12. Organism_taxid: 83333. Strain: k12. Gene: def, fms, b3287, jw3248. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Chains: A, B, C (164 residues) CATH domain: 3.90.45.10
3l87
The crystal structure of smu.143c from streptococcus mutans
Source: Streptococcus mutans. Organism_taxid: 210007. Strain: ua159. Gene: smu.143c. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Chain: A (200 residues) CATH domain: 3.90.45.10
3m6o
Crystal structure of arabidopsis thaliana peptide deformylas (atpdf1b)
Source: Arabidopsis thaliana. Thale-cress. Organism_taxid: 3702. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (180 residues) CATH domain: 3.90.45.10
3m6p
Crystal structure of arabidopsis thaliana peptide deformylas (atpdf1b) in complex with actinonin
Source: Arabidopsis thaliana. Thale-cress. Organism_taxid: 3702. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (180 residues) CATH domain: 3.90.45.10
3m6q
Crystal structure of arabidopsis thaliana peptide deformylas (atpdf1b) g41q mutant in complex with actinonin
Source: Arabidopsis thaliana. Thale-cress. Organism_taxid: 3702. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (181 residues) CATH domain: 3.90.45.10
3m6r
Crystal structure of arabidopsis thaliana peptide deformylas (atpdf1b) g41m mutant in complex with actinonin
Source: Arabidopsis thaliana. Thale-cress. Organism_taxid: 3702. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B, C, D (180 residues) CATH domain: 3.90.45.10
3o3j
Crystal structure of arabidopsis thaliana peptide deformylas (atpdf1b) in complex with inhibitor 6b
Source: Arabidopsis thaliana. Thale-cress. Organism_taxid: 3702. Gene: def. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (180 residues) CATH domain: 3.90.45.10
3oca
Crystal structure of peptide deformylase from ehrlichia chaf
Source: Ehrlichia chaffeensis. Organism_taxid: 205920. Strain: arkansas. Gene: cdd:29602, def, ech_0073. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Chains: A, B (179 residues) CATH domain: 3.90.45.10
3pn2
Crystal structure of arabidopsis thaliana petide deformylase (atpdf1b) (crystallized in peg-550-mme)
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: def2, pdf1b. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (180 residues) CATH domain: 3.90.45.10
3pn3
Crystal structure of arabidopsis thaliana petide deformylase (atpdf1b) in complex with inhibitor 21
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: def2, pdf1b. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (181 residues) CATH domain: 3.90.45.10
3pn4
Crystal structure of arabidopsis thaliana petide deformylase (atpdf1b) in complex with actinonin (crystallized in peg-55
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: def2, pdf1b. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (181 residues) CATH domain: 3.90.45.10
3pn5
Crystal structure of arabidopsis thaliana petide deformylase (atpdf1b) g41q mutant
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: def2, pdf1b. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (181 residues) CATH domain: 3.90.45.10
3pn6
Crystal structure of arabidopsis thaliana petide deformylase (atpdf1b) g41m mutant
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: def2, pdf1b. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B (181 residues) CATH domain: 3.90.45.10
3qu1
Peptide deformylase from vibrio cholerae
Source: Vibrio cholerae. Organism_taxid: 666. Strain: o1 biovar eltor str. N16961. Gene: def, def2, vc_a0150. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Chains: A, B (168 residues) CATH domain: 3.90.45.10
3str
Strep peptide deformylase with a time dependent thiazolidine hydroxamic acid
Source: Streptococcus pneumoniae. Organism_taxid: 1313. Gene: defb, def3. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: P (193 residues) CATH domain: 3.90.45.10
3svj
Strep peptide deformylase with a time dependent thiazolidine
Source: Streptococcus pneumoniae. Organism_taxid: 1313. Gene: defb, def3. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: P (193 residues) CATH domain: 3.90.45.10
3sw8
Strep peptide deformylase with a time dependent dichlorobenz reverse hydroxamic acid
Source: Streptococcus pneumoniae. Organism_taxid: 1313. Gene: defb, def3. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: P (194 residues) CATH domain: 3.90.45.10
3u04
Crystal structure of peptide deformylase from ehrlichia chaf complex with actinonin
Source: Ehrlichia chaffeensis. Organism_taxid: 205920. Strain: arkansas. Gene: def, def1, ech_0073. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Chain: A (172 residues) CATH domain: 3.90.45.10
3u7k
Crystal structures of the staphylococcus aureus peptide defo complex with two classes of new inhibitors
Source: Staphylococcus aureus. Organism_taxid: 93062. Strain: col. Gene: sacol1100. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (185 residues) CATH domain: 3.90.45.10
3u7l
Crystal structures of the staphylococcus aureus peptide defo complex with two classes of new inhibitors
Source: Staphylococcus aureus. Organism_taxid: 93062. Strain: col. Gene: sacol1100. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (185 residues) CATH domain: 3.90.45.10
3u7m
Crystal structures of the staphylococcus aureus peptide defo complex with two classes of new inhibitors
Source: Staphylococcus aureus. Organism_taxid: 93062. Strain: col. Gene: sacol1100. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (185 residues) CATH domain: 3.90.45.10
3u7n
Crystal structures of the staphylococcus aureus peptide defo complex with two classes of new inhibitors
Source: Staphylococcus aureus. Organism_taxid: 93062. Strain: col. Gene: sacol1100. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (185 residues) CATH domain: 3.90.45.10
4al2
Peptide deformylase (ni-form) with hydrosulfide
Source: Escherichia coli. Organism_taxid: 469008. Strain: bl21(de3). Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: plyss.
Chains: A, B, C (162 residues) CATH domain: 3.90.45.10
4al3
Peptide deformylase (co-form) with mercaptoethanol
Source: Escherichia coli. Organism_taxid: 469008. Strain: bl21(de3). Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: plyss.
Chain: A (162 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group BME is 40.00% similar to enzyme product Formate
4az4
E.Coli deformylase with co(ii) and hydrosulfide
Source: Escherichia coli. Organism_taxid: 469008. Strain: bl21(de3). Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: plyss.
Chain: A (163 residues) CATH domain: 3.90.45.10
4dr8
Crystal structure of a peptide deformylase from synechococcu elongatus
Source: Synechococcus elongatus. Organism_taxid: 269084. Strain: pcc6301. Gene: def, syc0213_d, yp_170923. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Chains: A, B, C, D (188 residues) CATH domain: 3.90.45.10
Bound ligand:   Het Group EDO is 40.00% similar to enzyme product Formate
4dr9
Crystal structure of a peptide deformylase from synechococcu elongatus in complex with actinonin
Source: Synechococcus elongatus. Organism_taxid: 269084. Strain: pcc6301. Gene: def, syc0213_d, yp_170923. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Chains: A, B, C, D (182 residues) CATH domain: 3.90.45.10
4e9a
Structure of peptide deformylase form helicobacter pylori in with inhibitor
Source: Helicobacter pylori. Organism_taxid: 210. Gene: def, def11. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (163 residues) CATH domain: 3.90.45.10
4e9b
Structure of peptide deformylase form helicobacter pylori in with actinonin
Source: Helicobacter pylori. Organism_taxid: 210. Gene: def, def11. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chain: A (163 residues) CATH domain: 3.90.45.10
4eox
X-ray structure of polypeptide deformylase bound to a acylpr inhibitor
Source: Streptococcus pneumoniae. Organism_taxid: 171101. Strain: atcc baa-255 / r6. Gene: def, spr1310. Expressed in: escherichia coli. Expression_system_taxid: 562
Chain: P (192 residues) CATH domain: 3.90.45.10
4je6
Crystal structure of a human-like mitochondrial peptide defo
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: at1g15390, def, def1, f9l1.34, f9l1_34, pdf1a. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B (193 residues) CATH domain: 3.90.45.10
4je7
Crystal structure of a human-like mitochondrial peptide defo complex with actinonin
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: at1g15390, def, def1, f9l1.34, f9l1_34, pdf1a. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B (193 residues) CATH domain: 3.90.45.10
4je8
Crystal structure of a human-like mitochondrial peptide defo complex with met-ala-ser
Source: Arabidopsis thaliana. Mouse-ear cress,thale-cress. Organism_taxid: 3702. Gene: at1g15390, def, def1, f9l1.34, f9l1_34, pdf1a. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Other_details: chemical product
Chains: A, B (192 residues) CATH domain: 3.90.45.10