_EC 2.4.2.6 Nucleoside deoxyribosyltransferase. 8 PDB entries  
EC 2.-.-.- Transferases. [17,943 PDB entries]
EC 2.4.-.- Glycosyltransferases. [1,918 PDB entries]
EC 2.4.2.- Pentosyltransferases. [897 PDB entries]
EC 2.4.2.6 Nucleoside deoxyribosyltransferase. [8 PDB entries]    
1f8x

Reaction: 2-deoxy-D-ribosyl-base(1) + base(2) = 2-deoxy-D-ribosyl-base(2) + base(1).
 


2-deoxy-D-ribosyl-base(1)
+ base(2)
=
2-deoxy-D-ribosyl-base(2)
+ base(1)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site.

Comments: Base(1) and base(2) represent various purines and pyrimidines.
Links:   [IntEnz]   [ExPASy]   [KEGG]  

There are 8 PDB entries in enzyme class E.C.2.4.2.6

  PDB code Protein
1f8x
Crystal structure of nucleoside 2-deoxyribosyltransferase
Source: Lactobacillus leichmannii. Organism_taxid: 28039
Chains: A, B (156 residues) CATH domain: 3.40.50.1810
1f8y
Crystal structure analysis of nucleoside 2- deoxyribosyltransferase complexed with 5-methyl-2'- deoxypseudouridine
Source: Lactobacillus leichmannii. Organism_taxid: 28039
Chains: A, B (156 residues) CATH domain: 3.40.50.1810
Bound ligand:   Het Group 5MD is 44.00% similar to enzyme reactant 2-deoxy-D-ribosyl-base(1)
1s2d
Purine 2'-deoxyribosyl complex with arabinoside: ribosylated intermediate (araa)
Source: Lactobacillus helveticus. Organism_taxid: 1587. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C (165 residues) CATH domain: 3.40.50.1810
1s2g
Purine 2'deoxyribosyltransferase + 2'-deoxyadenosine
Source: Lactobacillus helveticus. Organism_taxid: 1587. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C (165 residues) CATH domain: 3.40.50.1810
Bound ligand:   Het Group 3D1 is 42.11% similar to enzyme reactant 2-deoxy-D-ribosyl-base(1)
1s2i
Purine 2'deoxyribosyltransferase + bromopurine
Source: Lactobacillus helveticus. Organism_taxid: 1587. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C (165 residues) CATH domain: 3.40.50.1810
1s2l
Purine 2'deoxyribosyltransferase native structure
Source: Lactobacillus helveticus. Organism_taxid: 1587. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C (165 residues) CATH domain: 3.40.50.1810
1s3f
Purine 2'-deoxyribosyltransferase + selenoinosine
Source: Lactobacillus helveticus. Organism_taxid: 1587. Expressed in: escherichia coli. Expression_system_taxid: 562
Chains: A, B, C (165 residues) CATH domain: 3.40.50.1810
Bound ligand:   Het Group SNI is 40.00% similar to enzyme reactant 2-deoxy-D-ribosyl-base(1)
4hx9
Designed phosphodeoxyribosyltransferase
Source: Lactobacillus leichmannii. Organism_taxid: 28039. Gene: ntd. Expressed in: escherichia coli. Expression_system_taxid: 562.
Chains: A, B, E, F, C, D, G, H (156 residues) CATH domain: 3.40.50.1810