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DB01041 : thalidomide

Approved drug thalidomide ... 6 targets DB01041

Generic name: thalidomide
 
Brand name(s): algosediv, asidon 3, asmadion, asmaval, bonbrain, bonbrrin, calmore, calmorex, contergan, corronarobetin, distaval, distaxal, distoval, ectiluran, enterosediv, gastrinide, glupan, glutanon, grippex, hippuzon, imida-lab, imidan, imidene, isomin, kedavon, kevadon, neaufatin, neosedyn, neosydyn, nerosedyn, neufatin, neurodyn, neurosedin, neurosedym, neurosedyn, nevrodyn, nibrol, noctosediv, noxodyn, pangul, pantosediv, poly-giron, polygripan, predni-sediv, pro-ban m, profarmil, psycholiquid, psychotablets, quetimid, quietoplex, sandormin, sedalis, sedalis sedi-lab, sedimide, sedin, sedisperil, sedoval, shin-naito s, shinnibrol, sleepan, slipro, softenil, softenon, talargan, talimol, talismol, telagan, telargan, telargean, tensival, thalin, thalinette, thalomid, theophilcholine, valgis, valgraine, yodomin.
Formula: C13H10N2O4
IUPAC Formula: 2-(2,6-Dioxopiperidin-3-Yl)-2,3-Dihydro-1h-Isoindole-1,3-Dione

6
There are 6 target proteins defined in DrugBank for this drug.
 5 
5 of these target proteins have one or more structures in the PDB.
Links  
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RxList
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PubChem
Information  
Pharmacology
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Action

 

Target proteins

DrugBank drug Target 1:   UniProt id: Q96SW2 (CRBN_HUMAN)  -  Protein cereblon
UniProt id: Q96SW2    441 a.a.  
4tz4 C     361 a.a. 361   X-ray 3.01 Å
There are no PDB entries containing thalidomide bound to this target protein, although there is 1 entry of the target protein in the PDB (see above).
DrugBank drug Target 2:   UniProt id: P01375 (TNFA_HUMAN)  -  Tumor necrosis factor
UniProt id: P01375    232 a.a.  
1. 1a8m A,B,C     152 a.a. 151   X-ray 2.30 Å
  2. 1tnf A,B,C     152 a.a. 151   X-ray 2.60 Å
  3. 3it8 A,B,C,G,...     152 a.a. 151   X-ray 2.80 Å
  4. 3wd5 A     152 a.a. 151   X-ray 3.10 Å
  5. 3l9j T     149 a.a. 149   X-ray 2.10 Å
   more ...
There are no PDB entries containing thalidomide bound to this target protein, although there are 15 entries of the target protein (click the orange, plus icon for a list).
DrugBank drug Target 3:   UniProt id: P19838 (NFKB1_HUMAN)  -  Nuclear factor NF-kappa-B p105 subunit
UniProt id: P19838    967 a.a.  
1. 1svc P     311 a.a. 310   X-ray 2.60 Å
  2. 3gut B,D,F,H     312 a.a. 306   X-ray 3.59 Å
  3. 1nfi B,D     107 a.a. 107   X-ray 2.70 Å
  4. 2dbf A     100 a.a. 88   NMR  
  5. 1mdi B     13 a.a. 13   NMR  
   more ...
There are no PDB entries containing thalidomide bound to this target protein, although there are 8 entries of the target protein (click the orange, plus icon for a list).
DrugBank drug Target 4:   Bacterial outer membrane
  No Pfam domain assignments available for this protein.
 
There are no structures of the target protein in the PDB (click icon on left for list of closest matches)
DrugBank drug Target 5:   UniProt id: P21802 (FGFR2_HUMAN)  -  Fibroblast growth factor receptor 2
UniProt id: P21802    820 a.a.  
1. 4j98 A,B     304 a.a. 302   X-ray 2.31 Å
  2. 4j96 A,B     302 a.a. 300   X-ray 2.30 Å
  3. 2pvy A,B,C,D     288 a.a. 287   X-ray 2.20 Å
  4. 2psq A,B     287 a.a. 287   X-ray 2.40 Å
  5. 3b2t A,B     288 a.a. 286   X-ray 1.80 Å
   more ...
There are no PDB entries containing thalidomide bound to this target protein, although there are 34 entries of the target protein (click the orange, plus icon for a list).
DrugBank drug Target 6:   UniProt id: P35354 (PGH2_HUMAN)  -  Prostaglandin G/H synthase 2
UniProt id: P35354    603 a.a.  
1v0x A     604 a.a. 603   Theor. model
There are no PDB entries containing thalidomide bound to this target protein, although there is 1 entry of the target protein in the PDB (see above).

Key:    PfamA domain  PfamB domain  Secondary structure  Bound drug molecule

 

 

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