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DB00224 : indinavir

Approved drug indinavir ... 1 target DB00224

Generic name: indinavir PDB Het Group: MK1
 
14 structures in PDB
Brand name(s): crixivan.
Formula: C36H47N5O4
IUPAC Formula: (2s)-1-[(2s,4r)-4-Benzyl-2-Hydroxy-4-{[(1s,2r)-2-Hydroxy-2,3-Dihydro-1h-Inden-1-Yl]carbamoyl}butyl]-
N-Tert-Butyl-4-(Pyridin-3-Ylmethyl)piperazine-2-Carboxamide
PDB name: N-[2(r)-Hydroxy-1(s)-Indanyl]-5-[(2(s)-Tertiary butylaminocarbonyl)-4(3-Pyridylmethyl)piperazino]-
4(s)-Hydroxy-2(r)-Phenylmethylpentanamide

1
There is 1 target protein defined in DrugBank for this drug.
 14 
There are 14 PDB structures containing the drug molecule bound to a protein that is not specified as a target.
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Target proteins

DrugBank drug Target 1:   UniProt id: O90777 (O90777_9PLVG)  -  HIV-1 protease
  No Pfam domain assignments available for this protein.
 
There are no structures of the target protein in the PDB (click icon on left for list of closest matches)

Key:  

 

Other proteins with indinavir bound in the PDB

There are 6 "non-target" proteins in the PDB containing the indinavir molecule bound. That is, the UniProt code for the proteins is missing or does not match the drug target above.

Protein 1:   UniProt id: O09893 ()  -  Protease (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=1 SV=1
UniProt id: O09893    98 a.a.  
1c6y A,B   99 a.a. 98   X-ray 2.50 Å
The PDB contains 1 entry of indinavir bound to this protein
Protein 2:   UniProt id: O12158 ()  -  Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
UniProt id: O12158    1430 a.a.  
2r5p A,B,C,D   99 a.a. 92   X-ray 2.30 Å
The PDB contains 1 entry of indinavir bound to this protein
Protein 3:   UniProt id: P03367 ()  -  Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
UniProt id: P03367    1446 a.a.  
1. 1hsg A,B   99 a.a. 99   X-ray 2.00 Å
  2. 1sdt A,B   99 a.a. 94   X-ray 1.30 Å
  3. 1sdu A,B   99 a.a. 93   X-ray 1.25 Å
  4. 1sdv A,B   99 a.a. 93   X-ray 1.40 Å
  5. 1sgu A,B   99 a.a. 89   X-ray 1.90 Å
The PDB contains 6 entries of indinavir bound to this protein
Protein 4:   UniProt id: P04584 ()  -  Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate ROD) GN=gag-pol PE=1 SV=3
UniProt id: P04584    1463 a.a.  
1hsh A,B,C,D   99 a.a. 99   X-ray 1.90 Å
The PDB contains 1 entry of indinavir bound to this protein
Protein 5:   UniProt id: P04587 ()  -  Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
UniProt id: P04587    1446 a.a.  
1. 2bpx A,B   99 a.a. 99   X-ray 2.80 Å
  2. 2avo A,B   99 a.a. 93   X-ray 1.10 Å
  3. 2avs A,B   99 a.a. 93   X-ray 1.10 Å
  4. 2avv A,B,D,E   99 a.a. 93   X-ray 1.50 Å
The PDB contains 4 entries of indinavir bound to this protein
Protein 6:   UniProt id: P35963 ()  -  Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
UniProt id: P35963    1434 a.a.  
1k6c A,B   99 a.a. 95   X-ray 2.20 Å
The PDB contains 1 entry of indinavir bound to this protein

Key:    PfamA domain  Secondary structure  Bound drug molecule

The black crosses on the secondary structure diagrams indicate where the PDB and UniProt sequences differ.

Where there is more than one PDB model for a given UniProt sequence, the models are ordered by: 1. decreasing order of similarity to the UniProt sequence, 2. X-ray structures (in order of increasing resolution), NMR structures, and theoretical models. Clicking on any PDB code take you to the corresponding PDBsum page.

 

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