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 HTHquery : Detecting DNA-binding proteins with a HTH motif   Final Results
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Linear Predictor scale :

UNLIKELY to be
a HTH DNA-bP
POSSIBLY
a HTH DNA-bP
LIKELY to be
a HTH DNA-bP
-9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9

Likely Hits

Chain A

No likely hits for chain A

Chain B
The first page of results lists the best (if any) hits for each of the chains selected. In this case chain A has nothing that looks like a DNA-binding HTH motif, while chain B clearly has a likely motif for the region of ~1265 (start residue number) to ~1290 (finish residue number). These are listed in a table below, with a colour scale indicating the likelihood of a hit.  All of the terms used in this page should be explained if you place your mouse cursor over them. Other pages which list much less likely hits can be reached at the links below.

 
 
Motif Position RMSD (Å) ASA (Å2) EMS Template Linear Predictor scale Template Visualisation Electrostatic Visualisation
1266-1287 0.94 1274.7 1.3 1HCRA 160-181 9
1266-1288 0.94 1311.7 1.6 1LMB3 31-53 9
1265-1295 0.96 1872.9 1.3 1AISB 1265-1295 9
1266-1288 1.25 1311.7 1.6 1B9MA 32-54 9
1266-1293 1.47 1593.6 1.1 1JHGA 66-93 8



Regions which are less likely to be DNA-binding HTH motifs
(as determined by the linear predictor)
Click here  for  "marginal hits"
(i.e. -4 < linear predictor score < 4 )
Click here for "unlikely hits"
(i.e. linear predictor score < -3 )




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