Popular services

Ensembl

Genome browser, API and database, providing access to reference genome annotation

Ensembl Genomes

An Ensembl-style portal for the genomes of non-vertebrate species

Clustal Omega

Multiple sequence alignment of DNA or protein sequences. Clustal Omega replaces the older ClustalW alignment tools.

European Nucleotide Archive (ENA)

A platform for the management, sharing, integration, archiving and dissemination of public-domain sequence data.

1000 Genomes

A deep catalog of shared human genetic variation in population groups worldwide.

NHGRI-EBI GWAS Catalog

The NHGRI-EBI GWAS Catalog is a quality-controlled, manually curated, literature-derived collection of all published genome-wide association studies.

Clustal Phylogeny

Commonly used phylogenetic tree generation methods provided by the ClustalW2 program.

EBI Metagenomics

A platform for the analysis and archiving of metagenomic and metatranscriptome data.

European Genome-phenome Archive

A service for permanent archiving and sharing of all types of potentially identifiable genetic, molecular and phenotypic data resulting from biomedical research projects.

All services

1000 Genomes

A deep catalog of shared human genetic variation in population groups worldwide.

BLAST [nucleotide]

Fast local similarity search tool for nucleotide sequence databases.

Clustal Omega

Multiple sequence alignment of DNA or protein sequences. Clustal Omega replaces the older ClustalW alignment tools.

Clustal Phylogeny

Commonly used phylogenetic tree generation methods provided by the ClustalW2 program.

Database of Genomic Variants archive

A repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.

EBI Metagenomics

A platform for the analysis and archiving of metagenomic and metatranscriptome data.

EMBOSS Tools

Selected EMBOSS tools for sequence analysis, providing: pairwise sequence alignment, sequence format conversion, sequence translation and back-translation, and sequence statistics.

ENA Sequence Search

Search the nucleotide sequence database by accession or with blast

ENA/SVA - Sequence Version Archive

Historical repository of EMBL-Bank entries

Ensembl

Genome browser, API and database, providing access to reference genome annotation

Ensembl Genomes

An Ensembl-style portal for the genomes of non-vertebrate species

European Genome-phenome Archive

A service for permanent archiving and sharing of all types of potentially identifiable genetic, molecular and phenotypic data resulting from biomedical research projects.

European Nucleotide Archive (ENA)

A platform for the management, sharing, integration, archiving and dissemination of public-domain sequence data.

European Variation Archive

A repository and browser for all types of genetic variation data

FASTA [nucleotide]

Sequence search for nucleotide sequences

FASTM [nucleotide]

Nucleotide fragment similarity search tool

GeneWise

Compare a protein sequence to a genomic DNA sequence.

GGSEARCH [nucleotide]

Optimal global similarity search tool to search nucleotide databases for sequences homologous to your query.

GLSEARCH [nucleotide]

Optimal global-query, local-database, similarity search tool to search nucleotide databases for sequences homologous to your query.

HUGO Gene Nomenclature Committee

The HGNC maintains a database of approved gene symbols, names and associated data for human genes and their vertebrate orthologs.

IMGT/HLA

The IMGT/HLA Database provides a specialist database for sequences of the human major histocompatibility complex (HLA) and includes the official sequences for the WHO Nomenclature Committee For Factors of the HLA System.

Kalign

Very fast multiple sequence alignment tool, suitable for large alignments.

LALIGN [nucleotide]

LALIGN finds internal duplications by calculating non-intersecting local alignments of protein or nucleotide sequences.

MAFFT

Multiple sequence alignment tool that uses Fast Fourier Transforms, suitable for medium alignments.

MapMi

Automated mapping and analysis of miRNA sequences across genomes

MView

Transform a sequence similarity search result into a multiple sequence alignment or reformat a multiple sequence alignment.

NHGRI-EBI GWAS Catalog

The NHGRI-EBI GWAS Catalog is a quality-controlled, manually curated, literature-derived collection of all published genome-wide association studies.

Patent databases

Non-redundant patent sequence databases providing access to full-text patent documents.

PhytoPath

A resource for plant pathogen genomes.

PromoterWise

PromoterWise compares two DNA sequences allowing for inversions and translocations, ideal for promoters.

Rfam

A database of covariance models and alignments to describe non-coding RNA families.

RNAcentral

Database of non-coding RNA sequences providing a single entry point for access to collaborating RNA resources.

Sequence Checksum Generator

Generation of checksums for protein and nucleotide sequences.

SSEARCH [nucleotide]

Smith-Waterman sequence similarity search against nucleotide databases.

T-Coffee

Consistency-based multiple sequence alignment tool.

TreeFam

A database of phylogenetic trees of animal species to provide orthologue/paralogue definitions.

Wise2DBA - DNA Block Aligner

Aligns two sequences under the assumption that the sequences share a number of colinear blocks of conservation separated by potentially large and varied lengths of DNA in the two sequences.