DNA & RNA
Popular services
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EnsemblEnsembl enables and advances genome science by providing high-quality, integrated annotation on vertebrate genomes within a consistent and accessible infrastructure. |
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Ensembl GenomesAn integrating portal for genome-scale data from non-veterbrate species. |
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European Nucleotide ArchiveA comprehensive archive of submitted nucleotide sequence read, assembly and functional annotation data |
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1000 GenomesA deep catalog of shared human genetic variation in population groups worldwide. |
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Clustal OmegaA new multiple sequence alignment tool using HMM-HMM profiles, suitable for medium-large alignments. |
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Clustal PhylogenyCommonly used phylogenetic tree generation methods provided by the ClustalW2 program. |
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European Genome-phenome ArchiveA service for permanent archiving and sharing of all types of potentially identifiable genetic, molecular and phenotypic data resulting from biomedical research projects. |
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EBI MetagenomicsA resource for the analysis and archiving of metagenomic data. |
All services
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1000 GenomesA deep catalog of shared human genetic variation in population groups worldwide. |
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CENSORA tool that screens query sequences against a reference collection of repeats. |
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Clustal OmegaA new multiple sequence alignment tool using HMM-HMM profiles, suitable for medium-large alignments. |
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Clustal PhylogenyCommonly used phylogenetic tree generation methods provided by the ClustalW2 program. |
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ClustalW2Multiple sequence alignment with ClustalW2. |
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Database of Genomic Variants archiveA repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species. |
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EBI MetagenomicsA resource for the analysis and archiving of metagenomic data. |
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EMBOSS ToolsSelected EMBOSS tools for sequence analysis, providing: pairwise sequence alignment, sequence format conversion, sequence translation and back-translation, and sequence statistics. |
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ENA/SVA - Sequence Version ArchiveHistorical repository of EMBL-Bank entries |
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EnsemblEnsembl enables and advances genome science by providing high-quality, integrated annotation on vertebrate genomes within a consistent and accessible infrastructure. |
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Ensembl GenomesAn integrating portal for genome-scale data from non-veterbrate species. |
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European Genome-phenome ArchiveA service for permanent archiving and sharing of all types of potentially identifiable genetic, molecular and phenotypic data resulting from biomedical research projects. |
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European Nucleotide ArchiveA comprehensive archive of submitted nucleotide sequence read, assembly and functional annotation data |
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FASTA [nucleotide]Similarity search tool for nucleotide sequence databases. |
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FASTM [nucleotide]Nucleotide fragment similarity search tool |
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GeneWiseCompare a protein sequence to a genomic DNA sequence. |
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GGSEARCH [nucleotide]Optimal global similarity search tool to search nucleotide databases for sequences homologous to your query. |
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GLSEARCH [nucleotide]Optimal global-query, local-database, similarity search tool to search nucleotide databases for sequences homologous to your query. |
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HUGO Gene Nomenclature CommitteeA database of approved gene symbols, names and associated data for human genes and their vertebrate orthologs. |
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IMGT/HLAThe IMGT/HLA Database provides a specialist database for sequences of the human major histocompatibility complex (HLA) and includes the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. |
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KalignVery fast multiple sequence alignment tool, suitable for large alignments. |
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LALIGN [nucleotide]LALIGN finds internal duplications by calculating non-intersecting local alignments of protein or nucleotide sequences. |
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MAFFTMultiple sequence alignment tool that uses Fast Fourier Transforms, suitable for medium alignments. |
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MUSCLEAccurate multiple sequence alignment tool, especially good with proteins. Suitable for medium alignments. |
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MViewTransform a sequence similarity search result into a multiple sequence alignment or reformat a multiple sequence alignment. |
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NCBI BLAST [nucleotide]Fast local similarity search tool for nucleotide sequence databases. |
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Patent databasesNon-redundant patent sequence databases providing access to full-text patent documents. |
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PromoterWisePromoterWise compares two DNA sequences allowing for inversions and translocations, ideal for promoters. |
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ReadseqConversion between common biological sequence formats. |
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RfamA database of covariance models and alignments to describe non-coding RNA families. |
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Sequence Checksum GeneratorGeneration of checksums for protein and nucleotide sequences. |
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SRS - Sequence Retrieval SystemAdvanced querying of EMBL-EBI databases. |
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SSEARCH [nucleotide]Smith-Waterman sequence similarity search against nucleotide databases. |
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T-CoffeeConsistency-based multiple sequence alignment tool that attempts to mitigate the pitfalls of progressive alignment methods. Suitable for small alignments. |
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TreeFamA database of phylogenetic trees of animal species to provide orthologue/paralogue definitions. |
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Web ServicesProgrammatic access to various data resources and analysis tools via Web Services technologies. |
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WU-BLAST [nucleotide]Sequence similarity search of nucleotide databases using WU-BLAST. |
Project websites
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CREATE |
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GWAS Catalog |
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International Nucleotide Sequence Database Collaboration |
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LRG |
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Mouse Tracer |
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Mousefinder.org |
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Neanderthal Genome |
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PhytoPathA resource for plant pathogen genomes. |
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Quantomics |