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Saez-Rodriguez Group SoftwareWe are involved in the development of the following tools:The development of both started at (and is still in collaboration with) the groups of Peter Sorger (Harvard Medical School) and Doug Lauffenburger (MIT). CellNetOptimizerCellNetOptimizer (CellNOpt) is a toolbox for creating logic-based models of signal transduction networks, and training them against high-throughput biochemical data, and is freely available both for R and matlab. More information can be found at www.cellnopt.org DataRailDataRail is an open source MATLAB toolbox for managing, transforming, visualizing, and modeling data, in particular the high-throughput data encountered in Systems Biology, and is hosted at http://code.google.com/p/sbpipeline/wiki/DataRail |
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