Submitted

Supplementary Discussion
Levy, E. D., Erba E. B., Robinson C. V., and Teichmann S. A.
(Submitted),
DIMACS Workshop on Data Mining Techniques in Bioinformatics
Rzhetsky, A., Gerstein M., Teichmann S., Dunker K., Oltvai Z., Stolovitzky G., and Troyanskaya O.
(Submitted),
19. Is there a relationship between protein connectivity and evolutionary rate?
Matthews, LR, Vaglio P., Reboul J., Ge H., Davis BP, Garrels J., Vincent S., Vidal M., Park J., Lappe M., et al.
1st International Student Symposium in Computational Biology. Volume 14, (Submitted), p.43
NAR Molecular Biology Database Collection entry number 1158
Pfreundt, U., James D., Tweedie S., WILSON D., Teichmann S., and Adryan B.
(Submitted),
The Immunoglobulin Superfamily in Drosophila melanogaster and Caenorhabditis elegans: Expansion in a Family Determining Biological Complexity
Vogel, C., Teichmann S. A., and Chothia C.
(Submitted),
PARTSLIST REVISIONS
Qian, J., Stenger B., Wilson C. A., Lin J., Jansen R., Teichmann S. A., Park J., Krebs W., Yu H., Alexandrov V., et al.
(Submitted),
CBB Seminars on January 30, 2012
Teichmann, S.
(Submitted),
Supplementary Information for the work on'Immunoglobulin Proteins in Drosophila melanogaster and Caenorhabditis elegans'
Vogel, C., Teichmann S. A., and Chothia C.
(Submitted),
Comparison of the Small Molecule Metabolic Pathways in Escherichia coli and Saccharomyces cerevisiae: Non-orthologous displacements, Gene Fusions and Protein Interactions
Jardine, O., and Teichmann S. A.
(Submitted),
Conservation of Domain Geometry in Proteins
Han, J. H., Kerrison N., Chothia C., and Teichmann S.
(Submitted),

2013

Gene Expression Genomics
Teichmann, S. A.
Biophysical Journal. Volume 104, Number 2, (2013), p.534a
Structural and Evolutionary Dynamics Facilitate Ordered Protein Complex Assembly
Marsh, J. A., Hernández H., Hall Z., Ahnert S. E., Perica T., Robinson C. V., and Teichmann S. A.
Biophysical Journal. Volume 104, Number 2, (2013), p.391a
Regulation of protein–protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes
Nishi, H., Fong J. H., Chang C., Teichmann S. A., and Panchenko A. R.
Mol. BioSyst.. (2013),
Accounting for technical noise in single-cell RNA-seq experiments
Brennecke, P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, et al.
Nature Methods. (2013), p.- doi: 10.1038/nmeth.2645

2012

Cellular crowding imposes global constraints on the chemistry and evolution of proteomes
Levy, E. D., De S., and Teichmann S. A.
Proceedings of the National Academy of Sciences. Volume 109, Number 50, (2012), p.20461–20466
Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells
Hebenstreit, D., Deonarine A., Babu M. M., and Teichmann S. A.
Current Opinion in Cell Biology. (2012),
Uncovering the interplay between DNA sequence preferences of transcription factors and nucleosomes
Teichmann, S. A., Wigge P. A., and Charoensawan V.
Cell Cycle. Volume 11, Number 24, (2012), p.0–1
DNA Sequence Preferences of Transcriptional Activators Correlate More Strongly than Repressors with Nucleosomes
Charoensawan, V., Janga S. C., Bulyk M. L., Babu M. M., and Teichmann S. A.
Molecular Cell. Volume 47, Number 2, (2012), p.183–192
How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome.
VAQUERIZAS, J. M., Teichmann S. A., and Luscombe N. M.
Methods in molecular biology (Clifton, NJ). Volume 786, (2012), p.3–19
Probing the diverse landscape of protein flexibility and binding
Marsh, J. A., Teichmann S. A., and Forman-Kay J. D.
Current Opinion in Structural Biology. (2012),
Epigenomic and transcriptional effects of Dnmt3b mutations in human ICF syndrome-derived B cell lines.
Gatto, S., Angelini C., Leppert S., Proserpio V., Teichmann S., D’Esposito M., and R Matarazzo M.
EMBnet. journal. Volume 17, Number B, (2012), p.p–33
Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs
Brookes, E., de Santiago I., Hebenstreit D., Morris K. J., Carroll T., Xie S. Q., Stock J. K., Heidemann M., Eick D., Nozaki N., et al.
Cell stem cell. Volume 10, Number 2, (2012), p.157–170
The interface of protein structure, protein biophysics, and molecular evolution
Liberles, D. A., Teichmann S. A., Bahar I., Bastolla U., Bloom J., Bornberg-Bauer E., Colwell L. J., de Koning AP, Dokholyan N. V., Echave J., et al.
Protein Science. (2012),
Evolution of oligomeric state through geometric coupling of protein interfaces
Perica, T., Chothia C., and Teichmann S. A.
Proceedings of the National Academy of Sciences. Volume 109, Number 21, (2012), p.8127–8132

2011

EpiChIP: gene-by-gene quantification of epigenetic modification levels
Hebenstreit, D., Gu M., Haider S., Turner D. J., Liò P., and Teichmann S. A.
Nucleic acids research. Volume 39, Number 5, (2011), p.e27–e27
Analysis and simulation of gene expression profiles in pure and mixed cell populations
Hebenstreit, D., and Teichmann S. A.
Physical biology. Volume 8, Number 3, (2011), p.035013
Relative solvent accessible surface area predicts protein conformational changes upon binding
Marsh, J. A., and Teichmann S. A.
Structure. Volume 19, Number 6, (2011), p.859–867
RNA sequencing reveals two major classes of gene expression levels in metazoan cells
Hebenstreit, D., Fang M., Gu M., Charoensawan V., van Oudenaarden A., and Teichmann S. A.
Molecular systems biology. Volume 7, Number 1, (2011),

2010

Lineage-specific expansion of DNA-binding transcription factor families
Charoensawan, V., WILSON D., and Teichmann S. A.
Trends in Genetics. Volume 26, Number 9, (2010), p.388–393
Research The developmental expression dynamics of Drosophila melanogaster transcription factors
Adryan, B., and Teichmann S. A.
(2010),
The developmental expression dynamics of Drosophila melanogaster transcription factors
Adryan, B., and Teichmann S. A.
Genome biology. Volume 11, Number 4, (2010), p.R40
Genomic repertoires of DNA-binding transcription factors across the tree of life
Charoensawan, V., WILSON D., and Teichmann S. A.
Nucleic acids research. Volume 38, Number 21, (2010), p.7364–7377
Homomeric protein complexes: evolution and assembly
Venkatakrishnan, AJ, Levy E. D., Teichmann S. A., and others
Biochemical Society Transactions. Volume 38, Number 4, (2010), p.879
Assessing computational methods of cis-regulatory module prediction
Su, J., Teichmann S. A., and Down T. A.
PLoS computational biology. Volume 6, Number 12, (2010), p.e1001020
The impact of gene expression regulation on evolution of extracellular signaling pathways
Charoensawan, V., Adryan B., Martin S., Söllner C., Thisse B., Thisse C., Wright G. J., and Teichmann S. A.
Molecular & Cellular Proteomics. Volume 9, Number 12, (2010), p.2666–2677
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
Pfreundt, U., James D. P., Tweedie S., WILSON D., Teichmann S. A., and Adryan B.
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D443–D447
How do proteins gain new domains
Marsh, J. A., Teichmann S. A., and others
Genome Biol. Volume 11, Number 7, (2010), p.126
Systemizing the structures and structuring the system
Levy, E. D., and Teichmann S. A.
Expert Review of Proteomics. Volume 7, Number 3, (2010), p.319–322
Sequences and topology: evolution of proteins and evolution of computational approaches
Teichmann, S. A., and Grishin N.
Current opinion in structural biology. Volume 20, Number 3, (2010), p.333–334
Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling
Martin, S., Söllner C., Charoensawan V., Adryan B., Thisse B., Thisse C., Teichmann S., and Wright G. J.
Molecular & Cellular Proteomics. Volume 9, Number 12, (2010), p.2654–2665
An atlas of combinatorial transcriptional regulation in mouse and man
Ravasi, T., Suzuki H., Cannistraci C. V., Katayama S., Bajic V. B., Tan K., Akalin A., Schmeier S., Kanamori-Katayama M., Bertin N., et al.
Cell. Volume 140, Number 5, (2010), p.744–752

2009

Protein domain organisation: adding order
Kummerfeld, S., and Teichmann S.
BMC bioinformatics. Volume 10, Number 1, (2009), p.39
A census of human transcription factors: function, expression and evolution
VAQUERIZAS, J. M., Kummerfeld S. K., Teichmann S. A., and Luscombe N. M.
Nature Reviews Genetics. Volume 10, Number 4, (2009), p.252–263
The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome
De, S., Teichmann S. A., and Babu M. M.
Genome research. Volume 19, Number 5, (2009), p.785–794
A HaemAtlas: characterizing gene expression in differentiated human blood cells
Watkins, N. A., Gusnanto A., de Bono B., De S., Miranda-Saavedra D., Hardie D. L., Angenent W. G. J., Attwood A. P., Ellis P. D., Erber W., et al.
Blood. Volume 113, Number 19, (2009), p.e1–e9
BloodExpress: a database of gene expression in mouse haematopoiesis
Miranda-Saavedra, D., De S., Trotter M. W., Teichmann S. A., and Göttgens B.
Nucleic acids research. Volume 37, Number suppl 1, (2009), p.D873–D879
The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development
Wilson, N. K., Miranda-Saavedra D., Kinston S., Bonadies N., Foster S. D., Calero-Nieto F., Dawson M. A., Donaldson I. J., Dumon S., Frampton J., et al.
Blood. Volume 113, Number 22, (2009), p.5456–5465
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Suzuki, H., Forrest A. R. R., van Nimwegen E., Daub C. O., Balwierz P. J., Irvine K. M., Lassmann T., Ravasi T., Hasegawa Y., de Hoon M. J. L., et al.
Nature genetics. Volume 41, Number 5, (2009), p.553–562
18-P009 Regulation and evolution of an extracellular glycoprotein interaction network
Martin, S., Charoensawan V., Soellner C., Adryan B., Thisse B., Thisse C., Teichmann S., and Wright G.
Mechanisms of Development. Volume 126, (2009), p.S287

2008

Assembly reflects evolution of protein complexes
Levy, E. D., Erba E. B., Robinson C. V., and Teichmann S. A.
Nature. Volume 453, Number 7199, (2008), p.1262–1265
Patterns of evolutionary constraints on genes in humans
De, S., Lopez-Bigas N., and Teichmann S. A.
BMC evolutionary biology. Volume 8, Number 1, (2008), p.275
Networks for all
Ahnert, S. E., and Teichmann S. A.
Genome Biology. Volume 9, Number 10, (2008), p.324
Functional protein divergence in the evolution of Homo sapiens
Lopez-Bigas, N., De S., Teichmann S. A., and others
Genome Biol. Volume 9, Number 2, (2008), p.R33
Structure and distribution of pentapeptide repeats in bacteria
Bateman, A., Murzin A. G., and Teichmann S. A.
Protein science. Volume 7, Number 6, (2008), p.1477–1480
DBD––taxonomically broad transcription factor predictions: new content and functionality
WILSON, D., Charoensawan V., Kummerfeld S. K., and Teichmann S. A.
Nucleic acids research. Volume 36, Number suppl 1, (2008), p.D88–D92
Genomes and evolution: multidimensional approaches to understanding diversity.
Teichmann, S., and Patel N. H.
Current opinion in genetics & development. Volume 18, Number 6, (2008), p.469
Tight regulation of unstructured proteins: from transcript synthesis to protein degradation
Gsponer, J., Futschik M. E., Teichmann S. A., and Babu M. M.
Science. Volume 322, Number 5906, (2008), p.1365–1368
Chance and necessity in chromosomal gene distributions
Hermsen, R., ten Wolde P. R., and Teichmann S.
Trends in Genetics. Volume 24, Number 5, (2008), p.216–219
Sequences and topology: from genome structure to protein structure.
Teichmann, S. A., and Grishin N. V.
Current opinion in structural biology. Volume 18, Number 3, (2008), p.340
Common variants near MC4R are associated with fat mass, weight and risk of obesity
Loos, R. J. F., Lindgren C. M., Li S., Wheeler E., Zhao J. H., Prokopenko I., Inouye M., Freathy R. M., Attwood A. P., Beckmann J. S., et al.
Nature genetics. Volume 40, Number 6, (2008), p.768–775

2007

Evolution of genes and genomes on the Drosophila phylogeny. Nature
Clark, A. G., Eisen M. B., Smith D. R., and others
Nature. Volume 450, (2007),
Analysis of Assembly and Disassembly Pathways of Non-covalent Homooligomeric Complexes
Erba, E. B., Levy E., Hernandez H., Lane L., Teichmann S., and Robinson C. V.
55 th ASMS Conference Proceedings. (2007),
The (in) dependence of alternative splicing and gene duplication
Talavera, D., Vogel C., Orozco M., Teichmann S. A., and de La Cruz X.
PLoS computational biology. Volume 3, Number 3, (2007), p.e33
The folding and evolution of multidomain proteins
Han, J. H., Batey S., Nickson A. A., Teichmann S. A., and Clarke J.
Nature Reviews Molecular Cell Biology. Volume 8, Number 4, (2007),
Evolution of genes and genomes on the Drosophila phylogeny.
Hultmark, D., Clark A. G., Eisen M. B., Smith D. R., Bergman C. M., Oliver B., Markow T. A., Kaufman T. C., Kellis M., Gelbart W., et al.
Nature. Volume 450, Number 7167, (2007), p.203–218
Computational identification of site-specific transcription factors in Drosophila
Adryan, B., and Teichmann S. A.
Fly. Volume 1, Number 3, (2007), p.142–145
Evolution of genes and genomes on the Drosophila phylogeny
Clark, A. G., Eisen M. B., Smith D. R., Bergman C. M., Oliver B., Markow T. A., Kaufman T. C., Kellis M., Gelbart W., Iyer V. N., et al.
Nature. Volume 450, Number 7167, (2007), p.203–218
The (In) dependence of
Talavera, D., Vogel C., Orozco M., Teichmann S. A., and de La Cruz X.
(2007),
Evolution of protein complexes by duplication of homomeric interactions
Pereira-Leal, J. B., Levy E. D., Kamp C., and Teichmann S. A.
Genome biology. Volume 8, Number 4, (2007), p.R51

2006

FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster
Adryan, B., and Teichmann S. A.
Bioinformatics. Volume 22, Number 12, (2006), p.1532–1533
The origins and evolution of functional modules: lessons from protein complexes
Pereira-Leal, J. B., Levy E. D., and Teichmann S. A.
Philosophical Transactions of the Royal Society B: Biological Sciences. Volume 361, Number 1467, (2006), p.507–517
3D complex: a structural classification of protein complexes
Levy, E. D., Pereira-Leal J. B., Chothia C., and Teichmann S. A.
PLoS computational biology. Volume 2, Number 11, (2006), p.e155
Sequences and topology: from methods to meaning
Teichmann, S. A., and Grishin N. V.
Current Opinion in Structural Biology. Volume 16, Number 3, (2006), p.359–361
DBD: a transcription factor prediction database
Kummerfeld, S. K., and Teichmann S. A.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D74–D81
Divergence of interdomain geometry in two-domain proteins
Han, J. H., Kerrison N., Chothia C., and Teichmann S. A.
Structure. Volume 14, Number 5, (2006), p.935–945
Predicting the strongest domain-domain contact in interacting protein pairs
Nye, T. M. W., Berzuini C., Gilks W. R., Babu M. M., and Teichmann S.
Statistical Applications in Genetics and Molecular Biology. Volume 5, Number 1, (2006),
Evolutionary dynamics of prokaryotic transcriptional regulatory networks
Madan Babu, M., Teichmann S. A., and Aravind L.
Journal of molecular biology. Volume 358, Number 2, (2006), p.614–633

2005

The importance of sequence diversity in the aggregation and evolution of proteins
Wright, C. F., Teichmann S. A., Clarke J., and Dobson C. M.
Nature. Volume 438, Number 7069, (2005), p.878–881
Statistical analysis of domains in interacting protein pairs
Nye, T. M. W., Berzuini C., Gilks W. R., Babu M. M., and Teichmann S. A.
Bioinformatics. Volume 21, Number 7, (2005), p.993–1001
Transcriptional networking
Teichmann, S. A., Bornberg-Bauer E., Luscombe N. M., and others
Genome biology. Volume 6, Number 9, (2005), p.344
The relationship between domain duplication and recombination
Vogel, C., Teichmann S. A., Pereira-Leal J., and others
Journal of molecular biology. Volume 346, Number 1, (2005), p.355–366
Novel specificities emerge by stepwise duplication of functional modules
Pereira-Leal, J. B., and Teichmann S. A.
Genome research. Volume 15, Number 4, (2005), p.552–559
The properties of protein family space depend on experimental design
Kunin, V., Teichmann S. A., Huynen M. A., and Ouzounis C. A.
Bioinformatics. Volume 21, Number 11, (2005), p.2618–2622
Relative rates of gene fusion and fission in multi-domain proteins.
Kummerfeld, S. K., Teichmann S. A., and others
Trends in genetics: TIG. Volume 21, Number 1, (2005), p.25
The transcriptional landscape of the mammalian genome
Carninci, P., Kasukawa T., Katayama S., Gough J., Frith M. C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., et al.
Science. Volume 309, Number 5740, (2005), p.1559–1563
The evolution of domain arrangements in proteins and interaction networks
Bornberg-Bauer, E., Beaussart F., Kummerfeld S. K., Teichmann S. A., and Weiner J.
Cellular and molecular life sciences. Volume 62, Number 4, (2005), p.435–445

2004

Structure and evolution of transcriptional regulatory networks
Babu, M. M., Luscombe N. M., Aravind L., Gerstein M., and Teichmann S. A.
Current opinion in structural biology. Volume 14, Number 3, (2004), p.283–291
Gene regulatory network growth by duplication
Teichmann, S. A., and Babu M. M.
Nature genetics. Volume 36, Number 5, (2004), p.492–496
Supra-domains: evolutionary units larger than single protein domains
Vogel, C., Berzuini C., Bashton M., Gough J., Teichmann S. A., and others
Journal of molecular biology. Volume 336, Number 3, (2004), p.809–824
Genes Encoding Subunits of Stable Complexes Are Clustered on the Yeast Chromosomes An Interpretation From a Dosage Balance Perspective
Teichmann, S. A., and Veitia R. A.
Genetics. Volume 167, Number 4, (2004), p.2121–2125
Other Sections▼
Bankier, A. T., Spriggs H. F., Fartmann B., Konfortov B. A., Madera M., Vogel C., Teichmann S. A., Ivens A., and Dear P. H.
Genome Res. Volume 14, Number 2, (2004), p.327
Nuclear receptors: the evolution of diversity
Schwabe, J. W. R., and Teichmann S. A.
Science Signalling. Volume 2004, Number 217, (2004), p.pe4
Evolution of multidomain proteins by gene fusion and fission
Kummerfeld, S. K., Vogel C., Madera M., Pacold M., and Teichmann S. A.
ISMB 2004. (2004),
Structure, function and evolution of multidomain proteins
Vogel, C., Bashton M., Kerrison N. D., Chothia C., and Teichmann S. A.
Current opinion in structural biology. Volume 14, Number 2, (2004), p.208–216
Looking at the bigger picture
Vogel, C., Teichmann S. A., and Chothia C.
Development. Volume 131, Number 10, (2004), p.2238–2240
Genomic analysis of regulatory network dynamics reveals large topological changes
Luscombe, N. M., Babu M. M., Yu H., Snyder M., Teichmann S. A., and Gerstein M.
Nature. Volume 431, Number 7006, (2004), p.308–312

2003

Evolution of the protein repertoire
Chothia, C., Gough J., Vogel C., and Teichmann S. A.
Science. Volume 300, Number 5626, (2003), p.1701–1703
Evolution of transcription factors and the gene regulatory network in Escherichia coli
Babu, M. M., and Teichmann S. A.
Nucleic Acids Research. Volume 31, Number 4, (2003), p.1234–1244
The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity
Vogel, C., Teichmann S. A., and Chothia C.
Development. Volume 130, Number 25, (2003), p.6317–6328
Evolution of the Protein Repertoire
Vogel, C., Teichmann S. A., Chothia C., and Cough J.
Science. Volume 300, Number 5626, (2003), p.1701–1703
Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination
Apic, G., Huber W., and Teichmann S. A.
Journal of structural and functional genomics. Volume 4, Number 2, (2003), p.67–78
Functional determinants of transcription factors in< i> Escherichia coli: protein families and binding sites
Madan Babu, M., and Teichmann S. A.
TRENDS in Genetics. Volume 19, Number 2, (2003), p.75–79
Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum
Bankier, A. T., Spriggs H. F., Fartmann B., Konfortov B. A., Madera M., Vogel C., Teichmann S. A., Ivens A., and Dear P. H.
Genome research. Volume 13, Number 8, (2003), p.1787–1799

2002

Conservation of gene co-regulation in prokaryotes and eukaryotes
Teichmann, S. A., Babu M. M., and others
Trends in biotechnology. Volume 20, Number 10, (2002), p.407–409
Homology, Pathway Distance and Chromosomal Localization of the Small Molecule Metabolism Enzymes in< i> Escherichia coli
Rison, S. C. G., Teichmann S. A., and Thornton J. M.
Journal of molecular biology. Volume 318, Number 3, (2002), p.911–932
Homology, pathway distance and chromosomal location of metabolism enzymes particpating in Escherichi coli
Rison, S., Teichmann S., and Thornton J. M.
Journal of Molecular Biology. Volume 318, Number 3, (2002), p.911–932
Principles of protein-protein interactions
Teichmann, S. A.
Bioinformatics. Volume 18, Number suppl 2, (2002), p.S249–S249
Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae
Jardine, O., Gough J., Chothia C., and Teichmann S. A.
Genome research. Volume 12, Number 6, (2002), p.916–929
The constraints protein–protein interactions place on sequence divergence
Teichmann, S. A.
Journal of molecular biology. Volume 324, Number 3, (2002), p.399–407

2001

Domain combinations in archaeal, eubacterial and eukaryotic proteomes
Apic, G., Gough J., and Teichmann S. A.
Journal of molecular biology. Volume 310, Number 2, (2001), p.311–325
An insight into domain combinations
Gordana, A., Gough J., and Teichmann S. A.
Bioinformatics. Volume 1, Number 1, (2001), p.1–7
The evolution and structural anatomy of the small molecule metabolic pathways in< i> Escherichia coli
Teichmann, S. A., Rison S. C. G., Thornton J. M., Riley M., Gough J., and Chothia C.
Journal of molecular biology. Volume 311, Number 4, (2001), p.693–708
Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast
Park, J., Lappe M., Teichmann S. A., and others
Journal of molecular biology. Volume 307, Number 3, (2001), p.929–938
An insight into domain combinations
Apic, G., Gough J., and Teichmann S. A.
Bioinformatics. Volume 17, Number suppl 1, (2001), p.S83–S89
PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information
Qian, J., Stenger B., Wilson C. A., Lin J., Jansen R., Teichmann S. A., Park J., G Krebs W., Yu H., Alexandrov V., et al.
Nucleic Acids Research. Volume 29, Number 8, (2001), p.1750–1764
Determination of protein function, evolution and interactions by structural genomics
Teichmann, S. A., Murzin A. G., and Chothia C.
Current Opinion in Structural Biology. Volume 11, Number 3, (2001), p.354–363
Small-molecule metabolism: an enzyme mosaic
Teichmann, S. A., Rison S. C. G., Thornton J. M., Riley M., Gough J., Chothia C., and others
TRENDS in Biotechnology. Volume 19, Number 12, (2001), p.482–486

2000

Mapping protein family interactions
Park, J., Lappe M., and Teichmann S. A.
(2000),
Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL
Teichmann, S. A., Chothia C., Church G. M., and Park J.
Bioinformatics. Volume 16, Number 2, (2000), p.117–124
MA02115, USA+ 1 617 432 7266 church@ arep. med. harvard. edu
Teichmann, S. A., Chothia C., and LMB MRC
Proceedings of the... Annual International Conference on Computational Molecular Biology: RECOMB. Volume 4, (2000), p.283
Immunoglobulin superfamily proteins in Caenorhabditis elegans
Teichmann, S. A., Chothia C., and others
Journal of molecular biology. Volume 296, Number 5, (2000), p.1367–1383
PDBİSL: an Intermediate Sequence Library for protein structure assignment
Teichmann, S. A., Chothia C., Church G. M., and Park J.
Proceedings of the fourth annual international conference on Computational molecular biology. (2000), p.283–289
Computing protein function
Teichmann, S. A., and Mitchison G.
Nature biotechnology. Volume 18, Number 1, (2000), p.27–27

1999

Telomerases
O'Reilly, M., Teichmann S. A., and Rhodes D.
Current opinion in structural biology. Volume 9, Number 1, (1999), p.56–65
Making family trees from gene families.
Teichmann, S. A., Mitchison G., and others
nature genetics. Volume 21, Number 1, (1999), p.66
Genome sequences and protein structures
Teichmann, S., Park J., and Chothia C.
PROC ANNU INT CONF COMPUT MOLECUL BIOL RECOMB. p 1 p. 1999. (1999),
Advances in structural genomics
Teichmann, S. A., Chothia C., and Gerstein M.
Current opinion in structural biology. Volume 9, Number 3, (1999), p.390–399
Is there a phylogenetic signal in prokaryote proteins?
Teichmann, S. A., and Mitchison G.
Journal of molecular evolution. Volume 49, Number 1, (1999), p.98–107

1998

DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single-and multi-domain proteins.
Park, J., and Teichmann S. A.
Bioinformatics. Volume 14, Number 2, (1998), p.144–150
Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
Teichmann, S. A., Park J., and Chothia C.
Proceedings of the National Academy of Sciences. Volume 95, Number 25, (1998), p.14658–14663

1997

Intermediate sequences increase the detection of homology between sequences
Park, J., Teichmann S. A., Hubbard T., Chothia C., and others
Journal of Molecular Biology. Volume 273, Number 1, (1997), p.349–354

1996

An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types
Smith, B. O., Ito Y., Raine A., Teichmann S., Ben-Tovim L., Nietlispach D., Broadhurst R. W., Terada T., Kelly M., Oschkinat H., et al.
Journal of biomolecular NMR. Volume 8, Number 3, (1996), p.360–368