Publications for 2006

2006

In silico compound activity reprofiling
Chan, A. W. E., Fagan RJ, and OVERINGTON J. P.
(2006),
Development and implementation of the PSI MI standard for molecular interaction
Kerrien, S., and Hermjakob H.
Simulation Conference, 2006. WSC 06. Proceedings of the Winter. (2006), p.1587–1594
DBD: a transcription factor prediction database
Kummerfeld, S. K., and Teichmann S. A.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D74–D81
Top-down standards will not serve systems biology
QUACKENBUSH, J., Stoeckert C., Ball C., BRAZMA A., Gentleman R., Huber W., Irizarry R., Salit M., Sherlock G., Spellman P., et al.
Nature. Volume 440, Number 7080, (2006), p.24
The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible.
Hermjakob, H., Apweiler R., and others
Expert review of proteomics. Volume 3, Number 1, (2006), p.1
Design optimization methods for genomic DNA tiling arrays
Bertone, P., Trifonov V., Rozowsky J. S., Schubert F., Emanuelsson O., Karro J., Kao M. Y., Snyder M., and Gerstein M.
Genome Res. Feb, Volume 16, Number 2, (2006), p.271–281
EMBL nucleotide sequence database: developments in 2005
Cochrane, G., Aldebert P., Althorpe N., Andersson M., Baker W., Baldwin A., Bates K., Bhattacharyya S., Browne P., van den Broek A., et al.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D10–D15
Sequences and topology: from methods to meaning
Teichmann, S. A., and Grishin N. V.
Current Opinion in Structural Biology. Volume 16, Number 3, (2006), p.359–361
Paul Nurse
Nurse, P.
The New Scientist. Volume 192, Number 2578, (2006), p.72 doi:
The HUPO Brain Proteome Project jamboree: centralised summary of the pilot studies
Hamacher, M., Stephan C., Blüggel M., Chamrad D., Körting G., Martens L., Müller M., Hermjakob H., Parkinson D., Dowsey A., et al.
Proteomics. Volume 6, Number 6, (2006), p.1719–1721
Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance
Seitan, V. C., Banks P., Laval S., Majid N. A., Dorsett D., Rana A., Smith J., Bateman A., Krpic S., Hostert A., et al.
PLoS biology. Volume 4, Number 8, (2006), p.e242
EGASP: the human ENCODE genome annotation assessment project
Guigó, R., Flicek P., Abril J. F., Reymond A., Lagarde J., Denoeud F., Antonarakis S., Ashburner M., Bajic V. B., Birney E., et al.
Genome Biol. Volume 7, Number Suppl 1, (2006), p.S2
Databases and resources for in silico proteome analysis
Pruess, M., Kersey P., Kulikova T., and Apweiler R.
Microbial Proteomics. (2006), p.395–414
[20] Data Storage and Analysis in ArrayExpress
BRAZMA, A., KAPUSHESKY M., Parkinson H., Sarkans U., and Shojatalab M.
Methods in Enzymology. Volume 411, (2006), p.370-386
Standards for systems biology
BRAZMA, A., KRESTYANINOVA M., and Sarkans U.
Nature Reviews Genetics. Volume 7, Number 8, (2006), p.593–605
Chemical Markup, XML, and the World Wide Web: CMLSpect, an XML vocabulary for spectral data
Kuhn, Stefan, Murray-Rust Peter, Lancashire Robert John, Rzepa Henry, Helmus Tobias, and Steinbeck Christoph
Journal of Chemical Information and Modeling. (2006), p.submitted
Proteomic Data Standardization, Deposition and Exchange
Orchard, S., Hermjakob H., Pruess M., and Apweiler R.
Methods and Principles in Medicinal Chemistry. Volume 28, (2006), p.19
How many drug targets are there?
OVERINGTON, J. P., Al-Lazikani B., and Hopkins A. L.
Nature Reviews Drug discovery. Volume 5, Number 12, (2006), p.993–996
Reactome–a knowledgebase of biological pathways
Schmidt, E., Birney E., Croft D., de Bono B., D’Eustachio P., Gillespie M., Gopinath G., Jassal B., Lewis S., Matthews L., et al.
On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops. (2006), p.710–719
3D complex: a structural classification of protein complexes
Levy, E. D., Pereira-Leal J. B., Chothia C., and Teichmann S. A.
PLoS computational biology. Volume 2, Number 11, (2006), p.e155
ArrayExpress service for reviewers/editors of DNA microarray papers
BRAZMA, A., and Parkinson H.
Nature biotechnology. Volume 24, Number 11, (2006), p.1321–1322
A Reagent Resource to Identify Proteins and Peptides of Interest for the Cancer Community A WORKSHOP REPORT
Haab, B. B., Paulovich A. G., Anderson N. L., Clark A. M., Downing G. J., Hermjakob H., LaBaer J., and Uhlén M.
Molecular & Cellular Proteomics. Volume 5, Number 10, (2006), p.1996–2007
Target hub proteins serve as master regulators of development in yeast
Borneman, A. R., Leigh-Bell J. A., Yu H., Bertone P., Gerstein M., and Snyder M.
Genes Dev. Feb, Volume 20, Number 4, (2006), p.435–448
XRate: a fast prototyping, training and annotation tool for phylo-grammars
Klosterman, P. S., Uzilov A. V., Bendana Y. R., Bradley R. K., Chao S., Kosiol C., Goldman N., and Holmes I.
BMC Bioinformatics. Volume 7, (2006), p.428
The Universal Protein Resource (UniProt): an expanding universe of protein information
Wu, C. H., Apweiler R., Bairoch A., NATALE D. A., Barker W. C., BOECKMANN B., Ferro S., GASTEIGER E., HUANG H., Lopez R., et al.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D187–D191
Predicting the strongest domain-domain contact in interacting protein pairs
Nye, T. M. W., Berzuini C., Gilks W. R., Babu M. M., and Teichmann S.
Statistical Applications in Genetics and Molecular Biology. Volume 5, Number 1, (2006),
By MARK REIMERS and VINCENT J. CAREY
Lyng, H., Badiee A., Svendsrud DH, Hovig E., Myklebost O., Stokke T., Parkinson H., Sarkans U., Shojatalab M., ABEYGUNAWARDENA N., et al.
Nucleic Acids Res. Volume 33, (2006), p.D553–D555
Proteomics and Beyond A report on the 3rd Annual Spring Workshop of the HUPO-PSI 21–23 April 2006, San Francisco, CA, USA
Orchard, S., Apweiler R., Barkovich R., Field D., Garavelli J.S., Horn D., Jones A., Jones P., Julian R., McNally R., et al.
Proteomics. Volume 6, Number 16, (2006), p.4439–4443
E-MSD: improving data deposition and structure quality
Tagari, M., Tate J., Swaminathan G.J., Newman R., Naim A., Vranken W., Kapopoulou A., Hussain A., Fillon J., Henrick K., et al.
Nucleic Acids Research. Volume 34, Issue Database issue, (2006), p.D287-D290 doi: 10.1093/nar/gkj163
Pfam: clans, web tools and services
Finn, R. D., Mistry J., Schuster-Böckler B., Griffiths-Jones S., Hollich V., Lassmann T., Moxon S., Marshall M., Khanna A., Durbin R., et al.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D247–D251
Ensembl 2006
Birney, E., Andrews D., Caccamo M., Chen Y., Clarke L., Coates G., Cox T., Cunningham F., Curwen V., Cutts T., et al.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D556–D561
In: In Silico Genomics and Proteomics ISBN 1-59454-995-8 Editors: N. Mulder and R. Apweiler, pp. 11-23{\copyright} 2006 Nova Science Publishers, Inc.
Petryszak, R., and Kersey P.
In silico genomics and proteomics: functional annotation of genomes and proteins. (2006), p.11
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
Rayner, T. F., Rocca-Serra P., Spellman P. T., Causton H. C., FARNE A., HOLLOWAY E., Irizarry R. A., Liu J., Maier D. S., Miller M., et al.
BMC Bioinformatics. Volume 7, (2006),
Ensembl 2006.
Birney, E., Andrews D., Caccamo M., Chen Y., Clarke L., Coates G., Cox T., Cunningham F., Curwen V., Cutts T., et al.
Nucleic Acids Res. 1, Volume 34, Number Database issue, (2006), England, p.D556-61 doi: 10.1093/nar/gkj133
Bioclipse: An open rich client workbench for chemo- and bioinformatics
Spjuth, Ola, Helmus Tobias, Willighagen Egon L., Kuhn Stefan, Eklund Martin, Steinbeck Christoph, and Wikberg Jarl E. S.
BMC Bioinformatics. (2006), p.submitted
Marcin Adamski, Thomas Blackwell, Rajasree Menon, Lennart Martens
Hermjakob, H., Taylor C., Omenn G.S., and others
Exploring the Human Plasma Proteome. (2006),
MEROPS: the peptidase database
Rawlings, N. D., Morton F. R., and Barrett A. J.
Nucleic Acids Research. Volume 34, Number suppl 1, (2006), p.D270–D272
The Distributed Annotation System for integration of biological data
Prlić, A., Birney E., Cox T., Down T., Finn R., Gräf S., Jackson D., Kähäri A., Kulesha E., Pettett R., et al.
Data Integration in the Life Sciences. (2006), p.195–203
Evolutionary dynamics of prokaryotic transcriptional regulatory networks
Madan Babu, M., Teichmann S. A., and Aravind L.
Journal of molecular biology. Volume 358, Number 2, (2006), p.614–633
in ArrayExpress
BRAZMA, A., KAPUSHESKY M., and Parkinson H.
DNA Microarrays: Databases and statistics. Volume 411, (2006), p.370
The work of the human proteome organisation's proteomics standards initiative (HUPO PSI)
Taylor, C.F., Hermjakob H., Julian Jr R. K., Garavelli J.S., Aebersold R., and Apweiler R.
Omics: a journal of integrative biology. Volume 10, Number 2, (2006), p.145–151
Linking publication, gene and protein data
Apweiler, R., and Kersey P.
Nature: Cell biology. Number 11, (2006), p.1183–1189 doi:
A high-resolution map of transcription in the yeast genome
David, L., Huber W., Granovskaia M., Toedling J., Palm C. J., Bofkin L., Jones T., Davis R. W., and Steinmetz L. M.
Proceedings of the National Academy of Sciences U.S.A.. Volume 103, (2006), p.5320-5325
RNA editing of human microRNAs
Blow, M. J., Grocock R. J., Van Dongen S., Enright A. J., and others
Genome biology. Volume 7, Number 4, (2006), p.R27
Divergence of interdomain geometry in two-domain proteins
Han, J. H., Kerrison N., Chothia C., and Teichmann S. A.
Structure. Volume 14, Number 5, (2006), p.935–945
Wrestling with SUMO and bio-ontologies
Stoeckert, C., Ball C., BRAZMA A., Brinkman R., Causton H., Fan L., Fostel J., Fragoso G., Heiskanen M., Holstege F., et al.
Nature biotechnology. Volume 24, Number 1, (2006), p.21–22
Proteomic Data Exchange and Storage
Orchard, S., Jones P., Taylor C., Zhu W., Julian Jr R. K., Hermjakob H., and Apweiler R.
Mass Spectrometry Data Analysis in Proteomics. Volume 367, (2006), p.261
SPINE bioinformatics and data-management aspects of high-throughput structural biology
Albeck, S, Alzari P, Andreini C, Banci L, Berry IM, Bertini I, Cambillau C, Canard B, Carter L, Cohen SX, et al.
Acta Crystallographica Section D: Biological Crystallography. Volume 62, Number 10, (2006), p.1184–1195
miRBase: microRNA sequences, targets and gene nomenclature
Griffiths-Jones, S., Grocock R. J., Van Dongen S., Bateman A., and Enright A. J.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D140–D144 doi:
Data standards: A call to action
Brooksbank, C., and QUACKENBUSH J.
Omics-a Journal of Integrative Biology. Volume 10, Number 2, (2006), p.94-99
In: In Silico Genomics and Proteomics ISBN 1-59454-995-8 Editors: N. Mulder and R. Apweiler, pp. 201-217{\copyright} 2006 Nova Science Publishers, Inc.
Kersey, P., Kulikova T., and Pruess M.
In silico genomics and proteomics: functional annotation of genomes and proteins. (2006), p.201
In: In Silico Genomics and Protcomics ISBN 1-59454-995-8 Editors: N. Mulder and R. Apweiler, pp. 55-70{\copyright} 2006 Nova Science Publishers, Inc.
Magrane, M., and O'Donovan C.
In silico genomics and proteomics: functional annotation of genomes and proteins. (2006), p.55 doi:
TranscriptSNPView: a genome-wide catalog of mouse coding variation.
Cunningham, Fiona, Rios Daniel, Griffiths Mark, Smith James, Ning Zemin, Cox Tony, Flicek Paul, Marin-Garcin Pablo, Herrero Javier, Rogers Jane, et al.
Nat Genet. 8, Volume 38, Number 8, (2006), United States, p.853 doi: 10.1038/ng0806-853a
The Blue Obelisk - Interoperability in Chemical Informatics
Guha, Rajarshi, Howard Michael T., Hutchison Geoffrey R., Murray-Rust Peter, Rzepa Henry, Steinbeck Christoph, Wegner Joerg, and Willighagen Egon L.
Journal of Chemical Information and Modeling. Volume 46, Number 3, (2006), p.991–998
In: In Silico Genomics and Proteomics ISBN 1-59454-995-8 Editors: N. Mulder and R. Apweiler, pp. 79-88{\copyright} 2006 Nova Science Publishers, Inc.
Orchard, S., and Hermjakob H.
In silico genomics and proteomics: functional annotation of genomes and proteins. (2006), p.79
Software patents in Bioinformatics
Valencia, A., and Bateman A.
Bioinformatics. Volume 22, Number 12, (2006), p.1415–1415
Picking pyknons out of the human genome
Meynert, A., and Birney E.
Cell. Volume 125, Number 5, (2006), p.836–838
Biocurators: contributors to the world of science
Bourne, P. E., and McEntyre J.
PLoS computational biology. Volume 2, Number 10, (2006),
Modelling in molecular biology: describing transcription regulatory networks at different scales
Schlitt, T., and BRAZMA A.
Philosophical Transactions of the Royal Society B: Biological Sciences. Volume 361, Number 1467, (2006), p.483–494
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
Côté, R.G., Jones P., Apweiler R., and Hermjakob H.
Bmc Bioinformatics. Volume 7, Number 1, (2006), p.97
The ESF Programme on Functional Genomics Workshop on Ã{¢} € ÂData Integration in Functional Genomics: Application to Biological PathwaysÃ{¢} € ™
Binz, P.A., Hermjakob H., and Van Der Vet P.
Comparative and functional genomics.. Volume 5, (2006),
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
Giraldez, A. J., Mishima Y., Rihel J., Grocock R. J., Van Dongen S., Inoue K., Enright A. J., and Schier A. F.
Science. Volume 312, Number 5770, (2006), p.75
FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster
Adryan, B., and Teichmann S. A.
Bioinformatics. Volume 22, Number 12, (2006), p.1532–1533
ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression
Blake, J., Schwager C., KAPUSHESKY M., and BRAZMA A.
Bioinformatics. Volume 22, Number 6, (2006), p.765–767
Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005
Orchard, S., Hermjakob H., Taylor C., Binz P.A., Hoogland C., Julian R., Garavelli J.S., Aebersold R., and Apweiler R.
Proteomics. Volume 6, Number 3, (2006), p.738–741
EMBL nucleotide sequence database: developments in 2005
Cochrane, Guy, Aldebert Philippe, Althorpe Nicola, Andersson Mikael, Baker Wendy, Baldwin Alastair, Bates Kirsty, Bhattacharyya Sumit, Browne Paul, Van Den Broek Alexandra, et al.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D10–D15
SPINE bioinformatics and data-management aspects of high-throughput structural biology
Albeck, S., Alzari P., Andreini C., Banci L., Berry I. M., Bertini I., Cambillau C., Canard B., Carter L., Cohen S. X., et al.
Acta Crystallographica Section D: Biological Crystallography. Volume 62, Number 10, (2006), p.1184–1195
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees
Whelan, S., de Bakker P. I. W., Quevillon E., Rodriguez N., and Goldman N.
Nucleic Acids Research. Volume 34, (2006), p.D327-D331
Genome reviews: standardizing content and representation of information about complete genomes
Sterk, P., Kersey P. J., and Apweiler R.
Omics: a journal of integrative biology. Volume 10, Number 2, (2006), p.114–118
Concept of sample in OMICS technology
Morrison, N., Cochrane G., Faruque N., Tatusova T., Tateno Y., Hancock D., and Field D.
OMICS. Volume 10, Number 2, (2006), p.127-37
Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.
Flicek, Paul, and Brent Michael R.
Genome Biol. Volume 7 Suppl 1, (2006), England, p.S8.1-9 doi: 10.1186/gb-2006-7-s1-s8
Classification and comparison of ligand-binding sites derived from grid-mapped knowledge-based potentials
Hoppe, C., Steinbeck C., and Wohlfahrt G.
Journal of Molecular Graphics \{&} Modelling. Volume 24, Number 5, (2006), p.328–340
Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project
Adamski, M., Blackwell T., Menon R., Martens L., Hermjakob H., Taylor C., Omenn G.S., and others
Exploring the Human Plasma Proteome. (2006), p.37–61
Bioinformatics—The new home for protein sequence motifs
Bateman, A.
Bioinformatics. Volume 22, Number 1, (2006), p.2–2
TranscriptSNPView: a genome-wide catalog of mouse coding variation
Cunningham, F., Rios D., Griffiths M., Smith J., Ning Z., Cox T., Flicek P., Marin-Garcin P., Herrero J., Rogers J., et al.
Nature genetics. Volume 38, Number 8, (2006), p.853
To the editor [2]
Stoeckert, C., Ball C., BRAZMA A., Brinkman R., Causton H., Fan L., Fostel J., Fragoso G., Heiskanen M., Holstege F., et al.
Nature Biotechnology. Volume 24, Number 1, (2006), p.21-22
MGED standards: work in progress
Ball, C. A., and BRAZMA A.
Omics: a journal of integrative biology. Volume 10, Number 2, (2006), p.138–144
PRIDE: a public repository of protein and peptide identifications for the proteomics community
Jones, P., Côté R.G., Martens L., Quinn A. F., Taylor C.F., Derache W., Hermjakob H., and Apweiler R.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D659–D663
Call for Papers–Dataset Briefs
Hermjakob, H.
Proteomics. Volume 6, Number 9, (2006), p.2633–2633
In: In Silico Genomics and Proteomics ISBN 1-59454-995-8 Editors: N. Mulder and R. Apweiler, pp. 109-123{\copyright} 2006 Nova Science Publishers, Inc.
Fernandez, X. M., Searle S., and Birney E.
In silico genomics and proteomics: functional annotation of genomes and proteins. (2006), p.109
The origins and evolution of functional modules: lessons from protein complexes
Pereira-Leal, J. B., Levy E. D., and Teichmann S. A.
Philosophical Transactions of the Royal Society B: Biological Sciences. Volume 361, Number 1467, (2006), p.507–517
Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
Deutsch, E. W., Ball C. A., Bova G. S., BRAZMA A., Bumgarner R. E., Campbell D., Causton H. C., Christiansen J., Davidson D., Eichner L. J., et al.
Omics: a journal of integrative biology. Volume 10, Number 2, (2006), p.205–208
The HUPO proteomics standards initiative–overcoming the fragmentation of proteomics data
Hermjakob, H.
Proteomics. Volume 6, Number S2, (2006), p.34–38
The Universal Protein Resource (UniProt): an expanding universe of protein information
Wu, Cathy H., Apweiler Rolf, Bairoch Amos, Natale Darren A., Barker Winona C., Boeckmann Brigitte, Ferro Serenella, Gasteiger Elisabeth, Huang Hongzhan, Lopez Rodrigo, et al.
Nucleic acids research. Volume 34, Number suppl 1, (2006), p.D187–D191
Phylogenetics by likelihood: evolutionary modeling as a tool for understanding the genome
Kosiol, C., Bofkin L., and Whelan S.
Journal of Biomedical Informatics. Volume 39, (2006), p.51-61
Linking publication, gene and protein data
Kersey, P., and Apweiler R.
Nature cell biology. Volume 8, Number 11, (2006), p.1183–1189
EGASP: the human ENCODE Genome Annotation Assessment Project.
Guigó, Roderic, Flicek Paul, Abril Josep F., Reymond Alexandre, Lagarde Julien, Denoeud France, Antonarakis Stylianos, Ashburner Michael, Bajic Vladimir B., Birney Ewan, et al.
Genome Biol. Volume 7 Suppl 1, (2006), England, p.S2.1-31 doi: 10.1186/gb-2006-7-s1-s2
Recent Developments of The Chemistry Development Kit (CDK) - An Open-Source Java Library for Chemo- and Bioinformatics
Steinbeck, Christoph, Hoppe Christian, Kuhn Stefan, Guha Rajarshi, and Willighagen Egon L.
Current pharmaceutical design. Volume 12, Number 17, (2006), p.2111–2120
Structural genomics meets computational biology
Bateman, A., and Valencia A.
Bioinformatics. Volume 22, Number 19, (2006), p.2319–2319
Dry work in a wet world: computation in systems biology
Kahlem, P., and Birney E.
Molecular systems biology. Volume 2, Number 1, (2006),
EMBL Nucleotide Sequence Database: developments in 2005
Cochrane, G., Aldebert P., Althorpe N., Andersson M., Baker W., Baldwin A., Bates K., Bhattacharyya S., Browne P., van den Broek A., et al.
Nucleic Acids Res. Volume 34, Number Database issue, (2006), p.D10-5
Standards for systems biology
BRAZMA, A., KRESTYANINOVA M., and Sarkans U.
Nature Reviews Genetics. Volume 7, Number 8, (2006), p.593-605
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
Rayner, T., Rocca-Serra P., Spellman P., Causton H., FARNE A., HOLLOWAY E., Irizarry R., Liu J., Maier D., Miller M., et al.
Bmc Bioinformatics. Volume 7, Number 1, (2006), p.489
Disrupted in Schizophrenia 1 Interactome: evidence for the close connectivity of risk genes and a potential synaptic basis for schizophrenia
Camargo, LM, Collura V., Rain JC, Mizuguchi K., Hermjakob H., Kerrien S., Bonnert TP, Whiting PJ, and Brandon NJ
Molecular psychiatry. Volume 12, Number 1, (2006), p.74–86
TEMBLOR Ã{¢} €  “Perspectives of EBI Database Services
Hermjakob, H., and Apweiler R.
Comparative and functional genomics.. Volume 3, (2006),
Can we rationally design promiscuous drugs?
Hopkins, A. L., Mason J. S., and OVERINGTON J. P.
Current opinion in structural biology. Volume 16, Number 1, (2006), p.127–136
EGASP: the human ENCODE Genome Annotation Assessment Project
Guigó Serra, R., Flicek P., Abril Ferrando J. F., Reymond A., Lagarde J., Denoeud F., Antonarakis S. E., Ashburner M., Bajic V. B., Birney E., et al.
Genome Biology, 2006, vol. 7, Suppl. 1: S2. (2006),
Markov Models for Protein Sequence Evolution
Kosiol, C.
(2006),
The Causes and Consequences of Variation in Evolutionary Processes Acting on DNA Sequences
Bofkin, L.
(2006),