TitleVivaldi: visualisation and validation of biomacromolecular NMR structures from the PDB
Publication TypeJournal Article
Year of Publication2013
AuthorsHendrickx P.MS, GUTMANAS A, KLEYWEGT GJ
JournalProteins
Volume81
Pagination583-591
ISBN Number1097-0134; 0887-3585
AbstractWe describe Vivaldi (VIsualisation and VALidation DIsplay; http://pdbe.org/vivaldi), a web-based service for the analysis, visualisation and validation of NMR structures in the Protein Data Bank (PDB). Vivaldi provides access to model coordinates and several types of experimental NMR data using interactive visualisation tools, augmented with structural annotations and model-validation information. The service presents information about the modelled NMR ensemble, validation of experimental chemical shifts, residual dipolar couplings, distance and dihedral angle constraints, as well as validation scores based on empirical knowledge and databases. Vivaldi was designed for both expert NMR spectroscopists and casual non-expert users who wish to obtain a better grasp of the information content and quality of NMR structures in the public archive. Proteins 2012. (c) 2012 Wiley Periodicals, Inc.
DOI10.1002/prot.24213